Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0107941 Rosa chinensis HOM05D000265 ORTHO05D000161 2.7e-22 107.8 56 100.0
FvH4_5g12330 Fragaria vesca HOM05D000265 ORTHO05D000161 4.3e-12 73.9 49 81.6
FAN08G1049 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-12 73.9 49 81.6
FAN13G1294 Fragaria x ananassa HOM05D000265 ORTHO05D000161 4.3e-12 73.9 49 81.6
FAN18G2366 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-12 73.9 49 81.6
RcHm_v2.0_Chr7g0185231 Rosa chinensis HOM05D000265 ORTHO05D000161 4.3e-12 73.9 49 81.6
FAN18G2732 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.6e-11 72.0 49 79.6
Prupe.5G220200 Prunus persica HOM05D000265 ORTHO05D000161 4.7e-11 70.5 49 77.6
MD14G1225700 Malus domestica HOM05D000265 ORTHO05D000161 8.0e-11 69.7 49 75.5
Eucgr.B00717 Eucalyptus grandis HOM05D000265 ORTHO05D000161 2.3e-10 68.2 37 83.8
MD06G1214800 Malus domestica HOM05D000265 ORTHO05D000161 2.3e-10 68.2 49 73.5
Sabra15G0075300 Salix brachista HOM05D000265 ORTHO05D000161 2.3e-10 68.2 49 73.5
CANSAT11G1892 Cannabis sativa HOM05D000265 ORTHO05D000161 3.1e-10 67.8 37 86.5
TWI15G0742 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 4.0e-10 67.4 49 75.5
Nitab4.5_0001599g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.2e-09 65.9 53 66.0
Nitab4.5_0004412g0020 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.2e-09 65.9 53 66.0
Potri.015G053400 Populus trichocarpa HOM05D000265 ORTHO05D000161 1.2e-09 65.9 49 73.5
Manes.05G138101 Manihot esculenta HOM05D000265 ORTHO05D000161 2.0e-09 65.1 37 81.1
Sed0019784 Sechium edule HOM05D000265 ORTHO05D000161 2.6e-09 64.7 49 73.5
Atru.chr9.811 Acer truncatum HOM05D000265 ORTHO05D000161 3.4e-09 64.3 53 66.0
COL.COLO4_24684 Corchorus olitorius HOM05D000265 ORTHO05D000161 3.4e-09 64.3 37 83.8
MBI07_g24750_MAGBIO Magnolia biondii HOM05D002315 ORTHO05D002416 3.4e-09 64.3 49 67.3
PGR083G0058 Punica granatum HOM05D000265 ORTHO05D000161 4.4e-09 63.9 36 80.6
Cpa.g.sc13.6 Carica papaya HOM05D000265 ORTHO05D000161 5.8e-09 63.5 37 78.4
ClCG06G014910 Citrullus lanatus HOM05D000265 ORTHO05D000161 5.8e-09 63.5 49 71.4
MELO3C017298.2 Cucumis melo HOM05D000265 ORTHO05D000161 5.8e-09 63.5 49 71.4
CsaV3_1G003740 Cucumis sativus L. HOM05D000265 ORTHO05D000161 5.8e-09 63.5 49 71.4
MBI19_g25652_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 5.8e-09 63.5 49 65.3
vmacro17665 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 5.8e-09 63.5 58 58.6
Ciclev10019485m.g Citrus clementina HOM05D000265 ORTHO05D000161 7.5e-09 63.2 37 86.5
Gohir.A09G177700 Gossypium hirsutum HOM05D000265 ORTHO05D000161 7.5e-09 63.2 43 74.4
Gohir.D09G173200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 7.5e-09 63.2 43 74.4
Gorai.006G195100 Gossypium raimondii HOM05D000265 ORTHO05D000161 7.5e-09 63.2 43 74.4
Lalb_Chr09g0331101 Lupinus albus HOM05D000265 ORTHO05D000161 7.5e-09 63.2 37 83.8
Peaxi162Scf00015g00843 Petunia axillaris HOM05D000265 ORTHO05D000161 7.5e-09 63.2 53 64.2
Aqoxy3G03947 Aquilegia oxysepala HOM05D000265 ORTHO05D000161 9.8e-09 62.8 49 69.4
Rhsim08G0135400 Rhododendron simsii HOM05D000265 ORTHO05D000161 9.8e-09 62.8 58 58.6
Sed0018990 Sechium edule HOM05D000265 ORTHO05D000161 9.8e-09 62.8 49 69.4
TPR.G35236 Trifolium pratense HOM05D000265 ORTHO05D000161 9.8e-09 62.8 37 78.4
CAN.G438.130 Capsicum annuum HOM05D000265 ORTHO05D000161 1.3e-08 62.4 53 62.3
Gohir.A12G266200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.3e-08 62.4 37 75.7
Gohir.D12G266400 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.3e-08 62.4 37 75.7
Gorai.008G286300 Gossypium raimondii HOM05D000265 ORTHO05D000161 1.3e-08 62.4 37 75.7
Actinidia02550 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.7e-08 62.0 53 62.3
Actinidia39824 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.7e-08 62.0 53 62.3
Glyma.05G233300 Glycine max HOM05D000265 ORTHO05D000161 2.2e-08 61.6 37 78.4
Phvul.004G158900 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 2.2e-08 61.6 37 75.7
Sc10g0009480 Simmondsia chinensis HOM05D000265 ORTHO05D000161 2.2e-08 61.6 54 59.3
HPP92_024803 Vanilla planifolia HOM05D000265 ORTHO05D000161 2.2e-08 61.6 52 65.4
Ca_25504_v3 Cicer arietinum L. HOM05D000265 ORTHO05D000161 3.7e-08 60.8 37 75.7
HanXRQChr14g0431171 Helianthus annuus HOM05D000265 ORTHO05D000161 3.7e-08 60.8 37 81.1
QL10p025048 Quercus lobata HOM05D000265 ORTHO05D000161 3.7e-08 60.8 37 83.8
TAR629G0733 Trochodendron aralioides HOM05D000265 ORTHO05D000161 3.7e-08 60.8 49 69.4
VMungo0251G3530 Vigna mungo HOM05D000265 ORTHO05D000161 3.7e-08 60.8 37 78.4
VMungo0464G1793 Vigna mungo HOM05D000265 ORTHO05D000161 3.7e-08 60.8 37 75.7
Lsat_1_v5_gn_2_12080 Lactuca sativa HOM05D000265 ORTHO05D000161 4.9e-08 60.5 37 81.1
Medtr6g084680 Medicago truncatula HOM05D000265 ORTHO05D000161 4.9e-08 60.5 37 73.0
Phvul.002G315500 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 4.9e-08 60.5 37 78.4
TWI81G0519 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 4.9e-08 60.5 49 67.3
CSS0019072 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 6.4e-08 60.1 53 62.3
Duzib205G0737 Durio zibethinus HOM05D000265 ORTHO05D000161 6.4e-08 60.1 37 78.4
Lj9A427T46 Lonicera japonica HOM05D000265 ORTHO05D000161 6.4e-08 60.1 49 65.3
Manes.01G012600 Manihot esculenta HOM05D000265 ORTHO05D000161 6.4e-08 60.1 37 75.7
Psat1g040040 Pisum sativum HOM05D000265 ORTHO05D000161 6.4e-08 60.1 53 56.6
GSVIVG01008270001 Vitis vinifera HOM05D000265 ORTHO05D000161 6.4e-08 60.1 49 67.3
CiPaw.15G129200 Carya illinoinensis HOM05D000265 ORTHO05D000161 8.3e-08 59.7 37 81.1
Glyma.09G185600 Glycine max HOM05D000265 ORTHO05D000161 8.3e-08 59.7 37 75.7
Lj4g0015519 Lotus japonicus HOM05D000265 ORTHO05D000161 8.3e-08 59.7 37 75.7
Solyc03g119640.4 Solanum lycopersicum HOM05D000265 ORTHO05D000161 8.3e-08 59.7 53 58.5
Sopen03g038470 Solanum pennellii HOM05D000265 ORTHO05D000161 8.3e-08 59.7 53 58.5
TAR371G0126 Trochodendron aralioides HOM05D000265 ORTHO05D000161 8.3e-08 59.7 49 69.4
Glyma.05G233400 Glycine max HOM05D000265 ORTHO05D000161 1.1e-07 59.3 37 75.7
BcaC05g25735 Brassica carinata HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
A06p14490 Brassica napus HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
C05p16710 Brassica napus HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
BolC5t30370H Brassica oleracea HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
BraA06t24573Z Brassica rapa HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
Dinv00415 Davidia involucrata HOM05D000265 ORTHO05D000161 1.4e-07 58.9 49 67.3
Dinv28086 Davidia involucrata HOM05D000265 ORTHO05D000161 1.4e-07 58.9 49 67.3
Glyma.07G090300 Glycine max HOM05D000265 ORTHO05D000161 1.4e-07 58.9 53 60.4
Lj2g0013154 Lotus japonicus HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 73.0
Lalb_Chr14g0371241 Lupinus albus HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 73.0
Medtr8g104110 Medicago truncatula HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
Medtr8g104130 Medicago truncatula HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 75.7
Psat7g012760 Pisum sativum HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 73.0
Thecc.03G033300 Theobroma cacao HOM05D000265 ORTHO05D000161 1.4e-07 58.9 37 78.4
DCAR_023198 Daucus carota HOM05D000265 ORTHO05D000161 1.9e-07 58.5 37 75.7
TPR.G32675 Trifolium pratense HOM05D000265 ORTHO05D000161 1.9e-07 58.5 37 73.0
AL3G31730 Arabidopsis lyrata HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
AT1G18420 Arabidopsis thaliana HOM05D000265 ORTHO05D000161 2.4e-07 58.2 37 78.4
AT3G18440 Arabidopsis thaliana HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
arahy.Tifrunner.gnm1.ann1.5R3T82 Arachis hypogaea HOM05D000265 ORTHO05D000161 2.4e-07 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.72M3AR Arachis hypogaea HOM05D000265 ORTHO05D000161 2.4e-07 58.2 37 70.3
BcaB04g20767 Brassica carinata HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
BcaC09g48804 Brassica carinata HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-07 58.2 53 56.6
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-07 58.2 53 56.6
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 2.4e-07 58.2 53 56.6
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.4e-07 58.2 53 56.6
Carub.0003s1822 Capsella rubella HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
CARHR093800 Cardamine hirsuta HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
Thhalv10020343m.g Eutrema salsugineum HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
Sp3g16550 Schrenkiella parvula HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
PGSC0003DMG400005713 Solanum tuberosum HOM05D000265 ORTHO05D000161 2.4e-07 58.2 53 56.6
Sp1g16370 Schrenkiella parvula HOM05D000265 ORTHO05D000161 3.2e-07 57.8 42 69.0
Ah.11g045020 Amaranthus hybridus HOM05D000265 ORTHO05D000161 4.1e-07 57.4 54 57.4
AL1G30850 Arabidopsis lyrata HOM05D000265 ORTHO05D000161 4.1e-07 57.4 37 78.4
arahy.Tifrunner.gnm1.ann1.C3P2HV Arachis hypogaea HOM05D000265 ORTHO05D000161 4.1e-07 57.4 37 67.6
CDE06G2613 Ceratophyllum demersum HOM05D000265 ORTHO05D000161 4.1e-07 57.4 53 60.4
Duzib068G0282 Durio zibethinus HOM05D000265 ORTHO05D000161 4.1e-07 57.4 37 75.7
Medtr8g104120 Medicago truncatula HOM05D000265 ORTHO05D000161 4.1e-07 57.4 37 73.0
Hund10233 Selenicereus undatus HOM05D000265 ORTHO05D000161 4.1e-07 57.4 49 65.3
HPP92_024814 Vanilla planifolia HOM05D000265 ORTHO05D000161 4.1e-07 57.4 53 64.2
Carub.0001s1806 Capsella rubella HOM05D000265 ORTHO05D000161 5.4e-07 57.0 37 78.4
ECA238G2791 Erigeron canadensis HOM05D000265 ORTHO05D000161 5.4e-07 57.0 49 63.3
Glyma.08G040700 Glycine max HOM05D000265 ORTHO05D000161 5.4e-07 57.0 37 73.0
Phvul.002G315600 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 5.4e-07 57.0 37 73.0
BcaB07g31851 Brassica carinata HOM05D000265 ORTHO05D000161 7.0e-07 56.6 37 73.0
BcaC07g41330 Brassica carinata HOM05D000265 ORTHO05D000161 7.0e-07 56.6 37 73.0
Thhalv10007198m.g Eutrema salsugineum HOM05D000265 ORTHO05D000161 7.0e-07 56.6 37 75.7
EL10Ac5g11431 Beta vulgaris HOM05D000265 ORTHO05D000161 9.2e-07 56.2 49 63.3
Ca_25452_v3 Cicer arietinum L. HOM05D000265 ORTHO05D000161 9.2e-07 56.2 37 70.3
DCAR_015137 Daucus carota HOM05D000265 ORTHO05D000161 9.2e-07 56.2 49 63.3
PSO063G3803 Papaver somniferum HOM05D000265 ORTHO05D000161 9.2e-07 56.2 37 75.7
PSO782G1659 Papaver somniferum HOM05D000265 ORTHO05D000161 9.2e-07 56.2 37 75.7
THA.LOC104821839 Tarenaya hassleriana HOM05D000265 ORTHO05D000161 9.2e-07 56.2 53 54.7
Aa31LG8G5260 Aethionema arabicum HOM05D000265 ORTHO05D000161 1.2e-06 55.8 53 54.7
Lalb_Chr22g0353001 Lupinus albus HOM05D000265 ORTHO05D000161 1.2e-06 55.8 37 70.3
VMungo0251G2746 Vigna mungo HOM05D000265 ORTHO05D000161 1.2e-06 55.8 37 73.0
Zm00001eb253540 Zea mays HOM05D000265 ORTHO05D000161 1.2e-06 55.8 37 70.3
Aqoxy3G00335 Aquilegia oxysepala HOM05D000265 ORTHO05D000161 1.6e-06 55.5 43 62.8
Cfa019792 Carpinus fangiana HOM05D000265 ORTHO05D000161 1.6e-06 55.5 37 73.0
CARHR019040 Cardamine hirsuta HOM05D000265 ORTHO05D000161 2.1e-06 55.1 37 73.0
AUR62008269 Chenopodium quinoa HOM05D000265 ORTHO05D000161 2.1e-06 55.1 49 61.2
AUR62031029 Chenopodium quinoa HOM05D000265 ORTHO05D000161 2.1e-06 55.1 49 61.2
Os06g0268800 Oryza sativa ssp. japonica HOM05D000265 ORTHO05D000161 2.1e-06 55.1 37 67.6
Cc04_g07240 Coffea canephora HOM05D000265 ORTHO05D000161 3.5e-06 54.3 53 54.7
SEGI_37424 Sequoiadendron giganteum HOM05D000265 ORTHO05D000161 3.5e-06 54.3 53 54.7
Haze_18657 Corylus avellana HOM05D000265 ORTHO05D000161 6.0e-06 53.5 37 70.3
Zm00001eb380200 Zea mays HOM05D000265 ORTHO05D000161 6.0e-06 53.5 37 64.9


User provided reference genes

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