Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 6288.8 3239 100.0
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 5543.0 3249 87.6
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 5541.5 3249 87.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 5490.6 3242 86.9
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 5271.4 3302 83.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 4593.5 3255 73.1
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 4362.8 3254 69.9
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 3459.1 3252 57.8
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 3434.8 3255 56.8
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 3426.7 3269 57.1
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 3290.0 3263 55.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 3289.2 3266 54.3
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 3235.7 3262 54.2
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 3231.4 3926 48.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 3156.7 3316 52.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 3155.9 3258 53.1
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 3090.8 3255 52.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 3072.0 3283 52.0
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 3030.4 3378 50.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2986.4 3264 50.8
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2973.7 3246 50.1
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2965.3 3022 53.7
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2950.2 3260 50.3
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2936.7 3248 49.7
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2878.6 3254 49.3
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2869.0 3264 49.5
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2847.0 3250 48.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2842.0 3284 48.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2830.4 3536 46.6
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2830.0 2906 53.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2773.8 3263 48.1
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2754.5 2977 51.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2731.1 3234 47.7
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2688.7 3263 47.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2640.9 3269 47.2
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2639.4 3135 47.8
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2618.6 3286 46.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2607.0 3281 46.4
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2587.0 3280 45.6
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2576.2 3298 44.7
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2554.6 3063 46.5
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2548.9 3259 45.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2524.6 3262 45.1
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2502.2 3257 44.9
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2500.3 3252 44.8
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2500.3 3252 44.8
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2498.8 3273 45.7
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2489.9 3248 44.5
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2484.5 3295 43.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2479.5 3296 44.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2472.6 3314 43.9
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2468.3 3302 43.9
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2465.3 3238 44.4
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2457.9 3286 44.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2451.8 3246 44.2
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2450.6 2280 58.2
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2450.2 3285 44.0
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2449.5 3328 43.1
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2434.1 3314 43.8
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2429.8 3258 44.8
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2414.4 3267 44.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2410.6 3269 44.6
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2399.8 3307 43.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2352.0 3216 44.1
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2310.8 3346 41.5
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2296.2 2951 45.2
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2257.6 2374 52.2
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2243.8 2334 52.4
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2233.4 3224 42.2
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2207.6 2561 48.2
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2142.1 1211 89.6
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 2119.7 3337 40.2
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 2076.6 2945 42.4
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1956.4 2879 40.4
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1895.6 1745 57.1
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1811.2 1286 70.9
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1784.2 1808 53.4
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1778.8 3314 35.9
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1734.9 2616 41.3
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1702.6 1446 60.1
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1670.6 1333 63.4
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1645.9 1698 51.8
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1619.0 1375 61.1
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1561.6 1348 60.3
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1528.1 1605 52.6
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1476.8 3257 32.5
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1472.2 1342 57.2
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1465.3 1766 46.5
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1366.3 1211 57.8
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1209.9 2574 33.3
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1187.9 1887 39.0
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1103.2 2800 30.6
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 0.0e+00 1093.2 1442 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 6.2e-304 1049.3 2073 33.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 2.0e-294 1017.7 1315 44.3
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-291 1008.1 1133 49.8
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 6.2e-288 996.1 1938 34.5
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 5.2e-287 993.0 1926 35.6
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 5.8e-270 936.4 1608 39.0
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.2e-253 881.3 1906 32.9
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.9e-252 878.2 596 72.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 3.3e-241 840.9 1794 33.3
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.0e-213 749.6 655 60.6
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.5e-180 639.4 2175 26.4
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 9.5e-180 636.7 1002 39.2
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 2.6e-177 628.6 889 41.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.5e-172 612.8 1332 31.8
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 5.6e-172 610.9 1324 33.2
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.2e-168 599.0 464 66.4
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.2e-168 599.0 887 40.9
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.2e-168 599.0 1316 32.8
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 2.1e-158 565.8 978 35.5
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.1e-154 553.5 947 36.5
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 3.1e-146 525.4 875 36.8
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.4e-143 516.5 864 37.6
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.3e-143 513.8 954 37.3
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.4e-138 500.0 1215 30.4
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.5e-111 410.2 449 47.0
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.8e-104 385.6 921 31.5
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 5.9e-97 361.7 334 59.9
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.7e-91 342.4 219 77.6
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.2e-89 337.4 184 89.7
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.0e-88 334.3 1224 26.4
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 7.5e-84 318.2 227 71.8
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.4e-82 313.9 677 31.6
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.9e-79 303.5 433 43.0
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.5e-73 282.7 153 90.8
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.1e-65 256.9 395 41.5
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.7e-65 256.5 170 77.1
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 9.5e-63 248.1 212 61.8
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.6e-57 230.7 572 32.5
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 1.7e-51 210.7 1106 23.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.7e-48 200.7 146 65.8
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.3e-48 200.3 147 65.3
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 3.0e-48 199.9 146 65.8
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.4e-45 191.0 182 54.9
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.0e-44 187.2 104 87.5
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-41 176.4 637 25.9
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.9e-31 144.1 203 37.9
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 7.4e-31 142.1 260 35.8
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.6e-30 141.0 123 61.8
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 2.8e-30 140.2 173 46.8
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 1.8e-29 137.5 205 35.6
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 1.1e-26 128.3 113 57.5
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.0e-24 120.2 334 29.6
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 9.7e-23 115.2 73 75.3
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.7e-22 113.2 64 85.9
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.3e-19 104.8 221 30.8
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 3.2e-18 100.1 326 25.8
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-18 99.4 459 24.2
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 7.9e-17 95.5 181 31.5
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 8.8e-16 92.0 111 46.8
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.8e-14 87.0 58 65.5
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 8.2e-14 85.5 70 54.3
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.1e-13 85.1 95 47.4
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 2.4e-13 84.0 78 50.0
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 9.1e-13 82.0 118 43.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.5e-12 81.3 696 18.8
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.5e-12 79.7 106 41.5
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.0e-11 76.3 490 20.0
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 1.4e-10 74.7 414 22.0
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.2e-10 73.6 386 21.5
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 4.2e-10 73.2 488 20.9
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.2e-10 73.2 488 20.9
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.2e-10 73.2 488 20.9
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 7.2e-10 72.4 435 19.8
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 9.4e-10 72.0 384 21.4
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.2e-09 71.6 792 18.2
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.2e-09 71.6 773 18.5
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 2.7e-09 70.5 491 20.0
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 2.7e-09 70.5 42 78.6
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.6e-09 70.1 502 19.7
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 6.1e-09 69.3 409 21.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 1.4e-08 68.2 785 19.6
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 4.4e-07 63.2 353 20.1
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 2.8e-06 60.5 495 20.4
FvH4_5g34340 Fragaria vesca HOM05D004524 ORTHO05D005477 3.7e-06 60.1 30 90.0


User provided reference genes

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