Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 7.3e-179 630.6 345 100.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.7e-167 592.8 345 93.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-166 589.7 345 92.8
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-166 589.7 345 92.8
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.9e-166 589.3 345 92.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.1e-166 587.4 345 92.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.2e-152 543.5 345 85.8
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.5e-152 543.1 345 85.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 5.4e-150 534.6 344 84.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.8e-148 529.6 345 84.1
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 5.1e-148 528.1 335 85.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 9.6e-147 523.9 335 84.8
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 9.0e-145 517.3 346 82.4
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.2e-144 516.9 337 81.6
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.4e-144 515.4 345 81.4
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 6.4e-143 511.1 345 80.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.1e-142 510.4 345 79.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.9e-142 509.6 345 79.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.2e-142 508.8 345 81.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.2e-142 508.4 345 79.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.5e-141 505.4 345 81.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 79.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 80.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-139 500.4 345 78.0
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.6e-138 496.5 372 74.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.8e-138 495.7 345 77.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 6.2e-138 494.6 345 77.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.8e-137 493.0 335 80.6
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 76.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 77.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 76.8
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.5e-136 490.0 343 78.7
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.4e-136 488.8 345 77.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 5.8e-136 488.0 347 77.8
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 5.8e-136 488.0 345 77.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.6e-136 487.6 343 78.1
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.0e-135 487.3 345 77.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.0e-135 487.3 342 78.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.3e-135 486.9 345 77.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.7e-135 486.5 345 76.2
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 5.5e-134 481.5 345 76.8
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.6e-133 479.9 340 77.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.6e-133 478.4 345 74.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 7.9e-133 477.6 345 74.5
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.8e-132 476.5 345 76.5
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.9e-132 475.3 345 73.9
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.5e-131 472.6 345 73.3
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.3e-130 470.3 345 73.6
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-130 469.9 345 74.5
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.8e-130 469.2 319 80.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.8e-130 468.4 345 73.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.4e-129 466.8 345 75.1
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.2e-128 463.8 345 73.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.4e-128 462.2 345 73.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 5.0e-127 458.4 345 73.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.6e-125 453.4 341 73.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.1e-125 453.0 345 73.9
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.9e-125 451.1 315 76.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.7e-124 448.0 341 72.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 8.7e-124 447.6 345 71.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.3e-123 445.7 345 71.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.2e-122 443.0 331 74.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.8e-122 441.8 345 70.1
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 4.5e-120 435.3 345 70.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.2e-119 433.0 345 69.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.9e-119 432.6 345 69.9
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 8.5e-119 431.0 345 69.9
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.5e-118 428.3 345 67.8
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 9.4e-118 427.6 289 78.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 69.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.6e-117 426.8 319 73.7
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.7e-117 426.0 346 69.7
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-116 424.1 345 69.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.0e-116 422.5 346 70.5
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.3e-114 414.8 394 62.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 8.2e-114 414.5 345 68.7
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.1e-113 414.1 345 68.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.1e-113 412.1 328 71.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.5e-112 410.2 345 68.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 3.4e-112 409.1 345 67.2
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.5e-112 408.7 345 67.5
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.9e-111 406.0 341 66.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 8.5e-111 404.4 337 67.4
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.9e-110 403.3 339 67.3
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 67.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.6e-109 400.2 345 66.1
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.6e-107 392.9 347 62.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.2e-106 389.8 289 73.4
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.7e-106 389.0 345 62.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 4.5e-104 382.1 345 63.5
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 4.5e-104 382.1 345 63.8
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.0e-103 380.9 345 67.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-103 380.6 300 72.0
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.7e-103 380.2 345 62.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.5e-103 377.9 345 62.9
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.5e-103 377.9 345 62.9
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.5e-102 377.1 345 62.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-101 373.6 373 61.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.7e-101 372.9 333 61.3
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.6e-101 372.5 343 62.4
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.0e-101 371.3 287 69.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.8e-98 362.8 348 59.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.3e-98 361.7 338 60.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.1e-97 360.9 324 61.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 4.1e-97 359.0 261 71.6
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.0e-96 356.7 366 57.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 6.5e-95 351.7 339 59.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.5e-95 351.3 349 59.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.5e-94 349.7 351 58.4
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.5e-94 349.7 345 61.2
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.7e-93 345.5 348 57.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.7e-90 335.9 341 58.1
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.4e-89 334.0 295 64.4
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.8e-89 333.6 340 59.4
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-88 330.1 346 57.5
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-88 330.1 346 57.5
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.5e-88 329.3 349 58.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.5e-88 328.9 321 60.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.3e-87 327.4 328 59.5
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-87 327.0 346 57.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-86 323.9 346 56.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.9e-86 323.6 348 56.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.5e-86 322.0 346 55.8
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-84 316.2 317 61.8
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-83 313.9 346 56.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.8e-83 311.2 343 56.6
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.3e-82 310.8 345 54.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.1e-81 306.2 346 54.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.9e-80 302.0 344 54.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-79 301.2 332 52.1
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-79 300.8 303 60.4
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.3e-79 300.1 345 51.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-78 297.7 346 52.6
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-78 297.7 340 52.4
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.7e-77 292.4 341 52.5
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 4.7e-77 292.4 331 52.6
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 9.8e-75 284.6 343 53.1
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.9e-74 282.3 340 50.9
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-73 281.2 285 60.4
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 4.6e-72 275.8 345 51.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 5.9e-72 275.4 341 51.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.3e-71 274.2 263 59.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.3e-71 273.5 303 56.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-70 270.8 284 58.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 7.3e-70 268.5 270 60.0
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-69 267.3 321 51.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 6.2e-69 265.4 296 56.1
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 3.9e-63 246.1 336 48.2
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.5e-62 244.2 345 42.3
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-61 241.1 291 50.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 8.1e-61 238.4 356 48.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.1e-60 238.0 338 44.4
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.6e-59 233.4 354 46.6
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.1e-57 228.0 138 92.8
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 5.4e-57 225.7 294 47.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.0e-55 221.5 343 39.7
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 4.0e-52 209.5 239 56.5
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-50 204.1 226 55.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.9e-50 203.4 192 56.2
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.6e-43 180.3 297 43.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.9e-42 176.8 153 66.7
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.4e-41 173.7 228 49.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.8e-40 168.7 172 60.5
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.6e-38 162.5 281 41.6
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-35 154.8 321 39.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.5e-30 137.1 290 40.0
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 7.6e-27 125.6 312 36.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 7.6e-27 125.6 312 36.2
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 6.4e-26 122.5 172 49.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 5.8e-19 99.4 111 57.7
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.7e-16 90.5 290 33.4
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.0e-15 88.6 111 53.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 8.7e-15 85.5 55 83.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 7.4e-14 82.4 54 81.5
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 7.2e-09 65.9 102 46.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 9.3e-09 65.5 116 44.0
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 4.3e-06 56.6 102 41.2


User provided reference genes

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