Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095681 Rosa chinensis HOM05D000001 ORTHO05D016299 3.2e-86 321.6 154 100.0
FvH4_1g10040 Fragaria vesca HOM05D000001 ORTHO05D016299 2.0e-35 152.9 154 50.0
FAN23G2245 Fragaria x ananassa HOM05D000001 ORTHO05D016299 2.0e-35 152.9 153 51.0
Glyma.02G064300 Glycine max HOM05D000001 ORTHO05D016299 1.9e-14 83.2 155 35.5
Glyma.02G064100 Glycine max HOM05D000001 ORTHO05D016299 2.5e-14 82.8 155 35.5
Glyma.02G064400 Glycine max HOM05D000001 ORTHO05D016299 9.6e-14 80.9 155 34.8
Glyma.02G064200 Glycine max HOM05D000001 ORTHO05D016299 3.6e-13 79.0 155 32.3
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.1e-12 77.4 137 32.8
Oeu064402.1 Olea europaea HOM05D000001 ORTHO05D000501 2.4e-12 76.3 101 38.6
Phvul.006G112900 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.4e-12 76.3 122 36.1
PSO170G1155 Papaver somniferum HOM05D002080 ORTHO05D002062 4.0e-12 75.5 134 37.3
Cfa000496 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.2e-11 73.9 141 32.6
VMungo0464G2193 Vigna mungo HOM05D000001 ORTHO05D016299 1.2e-11 73.9 155 34.2
TPR.G5913 Trifolium pratense HOM05D000001 ORTHO05D000501 1.5e-11 73.6 130 36.2
Psat5g059080 Pisum sativum HOM05D000001 ORTHO05D000501 3.4e-11 72.4 126 31.7
QL02p078664 Quercus lobata HOM05D000001 ORTHO05D000501 3.4e-11 72.4 138 32.6
FAN07G0496 Fragaria x ananassa HOM05D000001 ORTHO05D016299 4.5e-11 72.0 72 48.6
Glyma.03G194500 Glycine max HOM05D000001 ORTHO05D000501 4.5e-11 72.0 138 34.1
SGA_v2.0_scaffold205G41769 Striga asiatica HOM05D000001 ORTHO05D000501 4.5e-11 72.0 134 32.8
TPR.G40636 Trifolium pratense HOM05D000820 ORTHO05D000501 5.8e-11 71.6 136 32.4
Psat7g148720 Pisum sativum HOM05D000001 ORTHO05D000501 7.6e-11 71.2 119 32.8
TPR.G25368 Trifolium pratense HOM05D000001 ORTHO05D000501 7.6e-11 71.2 131 32.8
Manes.04G084851 Manihot esculenta HOM05D000001 ORTHO05D000501 9.9e-11 70.9 144 31.2
PGSC0003DMG400026738 Solanum tuberosum HOM05D000001 ORTHO05D000501 1.3e-10 70.5 128 32.8
Phvul.006G112700 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.2e-10 69.7 122 37.7
CAN.G567.53 Capsicum annuum HOM05D000001 ORTHO05D011474 2.9e-10 69.3 101 37.6
Medtr1g048200 Medicago truncatula HOM05D000001 ORTHO05D021353 3.8e-10 68.9 133 32.3
Gohir.A06G174500 Gossypium hirsutum HOM05D000001 ORTHO05D000501 4.9e-10 68.6 140 32.9
Sed0005369 Sechium edule HOM05D000001 ORTHO05D000501 4.9e-10 68.6 113 38.9
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 6.4e-10 68.2 125 32.0
DCAR_018604 Daucus carota HOM05D002283 ORTHO05D005725 6.4e-10 68.2 138 31.9
HanXRQChr08g0231581 Helianthus annuus HOM05D000001 ORTHO05D000501 6.4e-10 68.2 134 26.9
TWI34G0938 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 8.4e-10 67.8 129 27.9
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.4e-09 67.0 137 34.3
Gohir.D10G241200 Gossypium hirsutum HOM05D001457 ORTHO05D029874 1.4e-09 67.0 143 33.6
HanXRQChr08g0231391 Helianthus annuus HOM05D000001 ORTHO05D000501 1.4e-09 67.0 134 26.9
Dinv25964 Davidia involucrata HOM05D001403 ORTHO05D001313 1.9e-09 66.6 134 32.1
HanXRQChr08g0231661 Helianthus annuus HOM05D000001 ORTHO05D000501 1.9e-09 66.6 134 26.1
QL03p023809 Quercus lobata HOM05D000001 ORTHO05D000501 1.9e-09 66.6 104 33.7
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 3.2e-09 65.9 160 28.8
Cc11_g12970 Coffea canephora HOM05D000001 ORTHO05D000501 3.2e-09 65.9 129 28.7
PRCOL_00004971 Prasinoderma coloniale HOM05D000001 ORTHO05D000501 3.2e-09 65.9 106 35.8
ClCG10G015180 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.2e-09 65.5 121 34.7
QL03p023892 Quercus lobata HOM05D000001 ORTHO05D000501 4.2e-09 65.5 127 31.5
SMO367G0723 Selaginella moellendorffii HOM05D000001 ORTHO05D000501 4.2e-09 65.5 124 33.9
TPR.G10314 Trifolium pratense HOM05D000001 ORTHO05D000501 4.2e-09 65.5 136 31.6
CsaV3_3G041380 Cucumis sativus L. HOM05D000001 ORTHO05D000501 5.5e-09 65.1 115 36.5
EL10Ac2g02457 Beta vulgaris HOM05D000001 ORTHO05D038988 7.1e-09 64.7 102 33.3
EL10Ac2g02459 Beta vulgaris HOM05D000001 ORTHO05D038988 7.1e-09 64.7 102 33.3
Mapoly0015s0142 Marchantia polymorpha HOM05D000001 ORTHO05D000501 7.1e-09 64.7 144 30.6
QL03p019094 Quercus lobata HOM05D000001 ORTHO05D000501 7.1e-09 64.7 109 34.9
TPR.G13310 Trifolium pratense HOM05D000001 ORTHO05D000501 7.1e-09 64.7 149 31.5
arahy.Tifrunner.gnm1.ann1.47SRJF Arachis hypogaea HOM05D000001 ORTHO05D000501 9.3e-09 64.3 127 33.9
ClCG10G015160 Citrullus lanatus HOM05D000001 ORTHO05D000501 9.3e-09 64.3 139 32.4
CAN.G736.4 Capsicum annuum HOM05D000001 ORTHO05D000501 1.2e-08 63.9 115 30.4
Atru.chr2.2227 Acer truncatum HOM05D000001 ORTHO05D000501 1.6e-08 63.5 143 34.3
Aqoxy3G03527 Aquilegia oxysepala HOM05D023242 ORTHO05D021350 1.6e-08 63.5 133 30.1
arahy.Tifrunner.gnm1.ann1.4UZ7ZE Arachis hypogaea HOM05D000001 ORTHO05D000501 1.6e-08 63.5 127 29.9
Gohir.D10G240500 Gossypium hirsutum HOM05D001457 ORTHO05D029874 1.6e-08 63.5 143 32.2
Peaxi162Scf00336g00045 Petunia axillaris HOM05D000001 ORTHO05D000501 1.6e-08 63.5 127 33.1
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 2.7e-08 62.8 152 29.6
Nitab4.5_0003950g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000501 2.7e-08 62.8 115 31.3
Rhsim01G0246700 Rhododendron simsii HOM05D000001 ORTHO05D000501 3.5e-08 62.4 149 29.5
Lalb_Chr19g0138341 Lupinus albus HOM05D000001 ORTHO05D000501 4.6e-08 62.0 144 33.3
Medtr5g022810 Medicago truncatula HOM05D000001 ORTHO05D000501 6.0e-08 61.6 127 31.5
Peaxi162Scf01298g00002 Petunia axillaris HOM05D000001 ORTHO05D000501 6.0e-08 61.6 93 34.4
Phvul.004G052000 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 6.0e-08 61.6 112 29.5
Rhsim12G0135800 Rhododendron simsii HOM05D000001 ORTHO05D000501 6.0e-08 61.6 91 41.8
TPR.G31836 Trifolium pratense HOM05D000001 ORTHO05D000501 6.0e-08 61.6 156 29.5
Sed0005085 Sechium edule HOM05D000001 ORTHO05D000501 7.9e-08 61.2 93 37.6
Thecc.10G164700 Theobroma cacao HOM05D000001 ORTHO05D000501 7.9e-08 61.2 153 30.1
arahy.Tifrunner.gnm1.ann1.7W4W3Z Arachis hypogaea HOM05D000001 ORTHO05D000501 1.0e-07 60.8 160 30.0
Peaxi162Scf00023g00239 Petunia axillaris HOM05D000001 ORTHO05D000501 1.0e-07 60.8 133 27.8
Thecc.10G164500 Theobroma cacao HOM05D000001 ORTHO05D000501 1.0e-07 60.8 106 34.9
Cpa.g.sc128.34 Carica papaya HOM05D000001 ORTHO05D000501 1.3e-07 60.5 128 31.2
ClCG10G009300 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.3e-07 60.5 106 32.1
Gohir.A06G174200 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.3e-07 60.5 122 32.0
Duzib114G0934 Durio zibethinus HOM05D000001 ORTHO05D000501 1.8e-07 60.1 102 35.3
Nitab4.5_0000040g0340 Nicotiana tabacum HOM05D000001 ORTHO05D000501 1.8e-07 60.1 107 30.8
Pp3c2_17290 Physcomitrium patens HOM05D000001 ORTHO05D000501 1.8e-07 60.1 118 28.8
MSTRG.702 Avicennia marina HOM05D000001 ORTHO05D000501 2.3e-07 59.7 144 29.9
Cpa.g.sc128.32 Carica papaya HOM05D000001 ORTHO05D000501 2.3e-07 59.7 125 31.2
Peaxi162Scf00222g00314 Petunia axillaris HOM05D000001 ORTHO05D000501 2.3e-07 59.7 115 29.6
TAR374G0598 Trochodendron aralioides HOM05D000001 ORTHO05D000501 2.3e-07 59.7 125 28.8
Cc05_g03770 Coffea canephora HOM05D000001 ORTHO05D000501 3.0e-07 59.3 154 31.2
Dinv16652 Davidia involucrata HOM05D000001 ORTHO05D000501 3.0e-07 59.3 125 29.6
Solyc05g007940.3 Solanum lycopersicum HOM05D000001 ORTHO05D000501 3.0e-07 59.3 115 30.4
Sopen05g003790 Solanum pennellii HOM05D000001 ORTHO05D000501 3.0e-07 59.3 115 30.4
Gohir.A05G079350 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.9e-07 58.9 117 32.5
Medtr2g021830 Medicago truncatula HOM05D000001 ORTHO05D000501 3.9e-07 58.9 119 31.9
TPR.G28358 Trifolium pratense HOM05D000001 ORTHO05D000501 3.9e-07 58.9 159 28.9
Actinidia33201 Actinidia chinensis HOM05D000001 ORTHO05D000501 5.1e-07 58.5 108 32.4
Nn3g17251 Nelumbo nucifera HOM05D000001 ORTHO05D000501 5.1e-07 58.5 100 34.0
Nn4g23181 Nelumbo nucifera HOM05D000001 ORTHO05D000501 5.1e-07 58.5 119 31.1
Peaxi162Scf00222g00034 Petunia axillaris HOM05D000001 ORTHO05D000501 5.1e-07 58.5 107 29.9
QL03p068781 Quercus lobata HOM05D000001 ORTHO05D000501 5.1e-07 58.5 128 28.9
GSVIVG01019974001 Vitis vinifera HOM05D000001 ORTHO05D000501 5.1e-07 58.5 131 31.3
Ah.03g135030 Amaranthus hybridus HOM05D000001 ORTHO05D000501 6.7e-07 58.2 116 30.2
AUR62032789 Chenopodium quinoa HOM05D000001 ORTHO05D000501 6.7e-07 58.2 116 31.0
Gorai.011G277400 Gossypium raimondii HOM05D001457 ORTHO05D000501 6.7e-07 58.2 113 33.6
Medtr4g057825 Medicago truncatula HOM05D000001 ORTHO05D000501 6.7e-07 58.2 148 29.7
Phvul.004G050200 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 6.7e-07 58.2 115 29.6
EL10Ac6g13211 Beta vulgaris HOM05D000001 ORTHO05D000501 8.7e-07 57.8 142 26.8
Cc11_g12940 Coffea canephora HOM05D000001 ORTHO05D000501 8.7e-07 57.8 152 28.3
DCAR_031018 Daucus carota HOM05D000001 ORTHO05D004422 8.7e-07 57.8 117 30.8
Duzib264G0626 Durio zibethinus HOM05D000001 ORTHO05D000501 8.7e-07 57.8 142 32.4
HanXRQChr12g0380781 Helianthus annuus HOM05D000001 ORTHO05D000501 8.7e-07 57.8 117 33.3
Sed0026554 Sechium edule HOM05D054807 ORTHO05D000501 8.7e-07 57.8 119 30.3
AT1G26820 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 1.1e-06 57.4 100 33.0
Ciclev10032674m.g Citrus clementina HOM05D000001 ORTHO05D000501 1.1e-06 57.4 102 31.4
Dinv34984 Davidia involucrata HOM05D000001 ORTHO05D000501 1.1e-06 57.4 122 32.8
Dinv34986 Davidia involucrata HOM05D000001 ORTHO05D000501 1.1e-06 57.4 122 32.8
Duzib114G0102 Durio zibethinus HOM05D000001 ORTHO05D000501 1.1e-06 57.4 122 29.5
Migut.L01287 Erythranthe guttata HOM05D000001 ORTHO05D000501 1.1e-06 57.4 121 28.9
Eucgr.G02499 Eucalyptus grandis HOM05D000001 ORTHO05D000501 1.1e-06 57.4 117 29.9
arahy.Tifrunner.gnm1.ann1.M8R2T1 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.5e-06 57.0 157 27.4
AUR62005793 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.5e-06 57.0 116 31.0
AUR62032783 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.5e-06 57.0 116 30.2
Cc05_g03730 Coffea canephora HOM05D000001 ORTHO05D000501 1.5e-06 57.0 154 30.5
Gorai.010G215800 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.5e-06 57.0 122 29.5
Lsat_1_v5_gn_4_9761 Lactuca sativa HOM05D000001 ORTHO05D000501 1.5e-06 57.0 146 30.8
Oeu054869.1 Olea europaea HOM05D000001 ORTHO05D000501 1.5e-06 57.0 132 28.8
AL1G26110 Arabidopsis lyrata HOM05D000001 ORTHO05D000501 1.9e-06 56.6 98 34.7
EL10Ac6g13212 Beta vulgaris HOM05D000001 ORTHO05D000501 1.9e-06 56.6 150 32.7
Cpa.g.sc128.33 Carica papaya HOM05D000001 ORTHO05D000501 1.9e-06 56.6 100 32.0
Duzib150G1132 Durio zibethinus HOM05D000001 ORTHO05D000501 1.9e-06 56.6 127 29.1
Gohir.A12G164700 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.9e-06 56.6 98 32.7
Gohir.D12G167800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.9e-06 56.6 98 32.7
Gorai.008G180700 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.9e-06 56.6 98 32.7
Lj6C787G16 Lonicera japonica HOM05D000001 ORTHO05D000501 1.9e-06 56.6 90 33.3
VMungo0485G0002 Vigna mungo HOM05D000001 ORTHO05D000501 1.9e-06 56.6 109 31.2
AL1G38770 Arabidopsis lyrata HOM05D000001 ORTHO05D000501 2.5e-06 56.2 98 31.6
CiPaw.07G025200 Carya illinoinensis HOM05D000001 ORTHO05D000501 2.5e-06 56.2 93 31.2
AUR62005794 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.5e-06 56.2 117 30.8
Carub.0001s2415 Capsella rubella HOM05D000001 ORTHO05D000501 3.3e-06 55.8 98 30.6
Dinv34151 Davidia involucrata HOM05D000001 ORTHO05D000501 3.3e-06 55.8 125 27.2
Medtr5g041080 Medicago truncatula HOM05D000001 ORTHO05D000501 3.3e-06 55.8 160 29.4
PSO017G5772 Papaver somniferum HOM05D000001 ORTHO05D000501 3.3e-06 55.8 98 33.7
Rhsim01G0145400 Rhododendron simsii HOM05D000001 ORTHO05D000501 3.3e-06 55.8 98 31.6
CARHR025110 Cardamine hirsuta HOM05D000001 ORTHO05D000501 4.3e-06 55.5 98 30.6
AUR62005796 Chenopodium quinoa HOM05D000001 ORTHO05D000501 4.3e-06 55.5 120 29.2
Manes.05G102400 Manihot esculenta HOM05D000001 ORTHO05D000501 4.3e-06 55.5 125 31.2
PGR119G0008 Punica granatum HOM05D000001 ORTHO05D000501 4.3e-06 55.5 98 33.7
BcaC07g38728 Brassica carinata HOM05D000001 ORTHO05D000501 5.6e-06 55.1 98 32.7
C08p16540 Brassica napus HOM05D000001 ORTHO05D000501 5.6e-06 55.1 98 32.7
BolC8t49283H Brassica oleracea HOM05D000001 ORTHO05D000501 5.6e-06 55.1 98 32.7
AUR62005800 Chenopodium quinoa HOM05D000001 ORTHO05D000501 5.6e-06 55.1 116 30.2
Dinv44405 Davidia involucrata HOM05D000001 ORTHO05D000501 5.6e-06 55.1 71 38.0
Duzib268G1309 Durio zibethinus HOM05D000001 ORTHO05D000501 5.6e-06 55.1 99 31.3
Hund25232 Selenicereus undatus HOM05D000001 ORTHO05D000501 5.6e-06 55.1 116 28.4
Sc04g0008070 Simmondsia chinensis HOM05D000001 ORTHO05D000501 5.6e-06 55.1 130 32.3
Atru.chr5.151 Acer truncatum HOM05D000001 ORTHO05D000501 7.4e-06 54.7 134 29.1
BcaB03g13107 Brassica carinata HOM05D000001 ORTHO05D000501 7.4e-06 54.7 98 32.7
BcaB08g34379 Brassica carinata HOM05D000001 ORTHO05D000501 7.4e-06 54.7 98 31.6
COL.COLO4_22959 Corchorus olitorius HOM05D000001 ORTHO05D000501 7.4e-06 54.7 98 31.6
Thecc.02G345100 Theobroma cacao HOM05D000001 ORTHO05D000501 7.4e-06 54.7 99 32.3
TAR371G0300 Trochodendron aralioides HOM05D000001 ORTHO05D000501 7.4e-06 54.7 125 28.0
Actinidia06054 Actinidia chinensis HOM05D000001 ORTHO05D000501 9.6e-06 54.3 98 33.7
Ah.03g135020 Amaranthus hybridus HOM05D000001 ORTHO05D000501 9.6e-06 54.3 91 29.7
EL10Ac6g13213 Beta vulgaris HOM05D000001 ORTHO05D000501 9.6e-06 54.3 129 30.2
MELO3C012099.2 Cucumis melo HOM05D000001 ORTHO05D000501 9.6e-06 54.3 134 28.4
Lalb_Chr21g0309731 Lupinus albus HOM05D000001 ORTHO05D000501 9.6e-06 54.3 93 35.5
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 9.6e-06 54.3 103 30.1
Prupe.1G275400 Prunus persica HOM05D000001 ORTHO05D000501 9.6e-06 54.3 129 28.7
THA.LOC104805164 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 9.6e-06 54.3 99 31.3
VMungo0720G1318 Vigna mungo HOM05D000001 ORTHO05D000501 9.6e-06 54.3 104 31.7


User provided reference genes

Program Settings