Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.1e-112 409.8 192 100.0
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.6e-103 379.4 190 92.1
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.6e-103 379.4 190 92.1
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.9e-102 373.6 190 91.1
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 2.0e-101 372.5 190 91.1
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.0e-101 372.5 190 91.1
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 3.2e-91 338.6 192 79.2
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.4e-83 313.2 186 76.9
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 2.4e-83 312.4 192 76.6
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 7.1e-83 310.8 186 75.3
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 7.1e-83 310.8 188 74.5
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 2.1e-82 309.3 189 73.5
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 6.0e-82 307.8 189 74.1
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.8e-81 306.2 188 73.4
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.0e-81 305.4 189 73.0
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 3.9e-81 305.1 189 73.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 6.7e-81 304.3 189 72.0
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 8.7e-81 303.9 189 70.9
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 1.9e-80 302.8 190 72.6
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 7.4e-80 300.8 190 72.1
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 9.6e-80 300.4 189 73.5
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.6e-79 299.7 205 68.8
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 4.8e-79 298.1 189 71.4
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 6.2e-79 297.7 186 73.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 8.1e-79 297.4 189 73.0
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 8.1e-79 297.4 189 73.0
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.1e-78 297.0 189 70.4
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 1.4e-78 296.6 188 71.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.2e-77 293.5 187 71.1
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 2.0e-77 292.7 185 71.4
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 2.6e-77 292.4 189 70.4
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 2.6e-77 292.4 187 69.5
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 2.6e-77 292.4 189 71.4
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.6e-77 292.4 189 69.3
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.6e-77 292.4 187 71.1
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 5.8e-77 291.2 189 69.3
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 7.6e-77 290.8 189 68.3
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 9.9e-77 290.4 189 71.4
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 9.9e-77 290.4 188 71.3
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 1.3e-76 290.0 189 70.4
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 2.9e-76 288.9 220 63.2
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.9e-76 288.9 188 70.2
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 4.9e-76 288.1 189 69.3
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 6.4e-76 287.7 189 70.9
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.1e-75 287.0 189 70.9
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.1e-75 287.0 189 71.4
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.4e-75 286.6 187 70.1
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 1.4e-75 286.6 187 70.1
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 4.2e-75 285.0 191 69.1
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 7.1e-75 284.3 189 69.3
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 7.1e-75 284.3 188 71.3
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 7.1e-75 284.3 187 69.5
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.2e-74 283.5 187 71.7
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 68.8
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 68.8
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.7e-74 282.3 184 70.7
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 2.7e-74 282.3 186 69.4
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 2.7e-74 282.3 186 69.9
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 2.7e-74 282.3 186 68.8
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 7.9e-74 280.8 187 66.8
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.3e-73 280.0 187 71.1
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.8e-73 279.6 189 67.7
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.8e-73 279.6 186 68.3
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 3.0e-73 278.9 189 68.3
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 8.7e-73 277.3 185 70.8
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 8.7e-73 277.3 188 70.7
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 8.7e-73 277.3 189 67.2
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 1.9e-72 276.2 185 68.6
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.9e-72 276.2 188 67.6
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 2.5e-72 275.8 189 67.2
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 2.5e-72 275.8 185 69.7
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.5e-72 275.8 188 66.5
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 2.5e-72 275.8 186 66.7
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 3.3e-72 275.4 189 67.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 4.3e-72 275.0 188 66.5
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 5.6e-72 274.6 189 66.7
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 9.6e-72 273.9 188 67.6
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 2.8e-71 272.3 189 66.7
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.7e-71 271.9 189 65.6
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 4.8e-71 271.6 189 65.1
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.4e-70 269.2 189 64.6
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 5.3e-70 268.1 192 65.6
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 6.9e-70 267.7 189 64.0
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 6.9e-70 267.7 189 64.0
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 6.9e-70 267.7 188 65.4
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.2e-69 266.9 190 64.7
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 2.6e-69 265.8 184 66.3
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 2.9e-68 262.3 227 57.3
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.1e-67 260.4 187 64.7
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.2e-67 258.8 189 64.6
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 7.1e-67 257.7 184 63.0
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.6e-66 256.5 192 62.5
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.3e-65 253.4 189 64.0
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.3e-65 252.7 186 61.3
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 5.1e-65 251.5 185 64.9
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 8.7e-65 250.8 187 62.0
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.5e-64 250.0 185 63.2
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.9e-64 249.6 148 76.4
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 3.3e-64 248.8 188 61.2
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.3e-63 246.9 189 59.3
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 1.3e-63 246.9 145 75.2
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 5.3e-62 241.5 190 61.6
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.5e-61 240.0 185 60.0
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 2.2e-60 236.1 187 59.4
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 2.2e-60 236.1 187 59.4
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 6.5e-60 234.6 185 62.2
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.1e-59 233.8 181 62.4
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 9.4e-59 230.7 182 58.8
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 9.4e-59 230.7 190 58.4
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.2e-58 230.3 189 59.8
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.4e-57 226.9 180 59.4
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 9.7e-56 220.7 185 57.8
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.8e-55 219.2 179 62.0
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 3.7e-55 218.8 189 58.2
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.2e-53 213.8 182 57.7
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 2.0e-53 213.0 188 55.3
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.7e-52 209.9 185 57.3
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.7e-52 209.9 186 55.9
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 5.0e-52 208.4 135 69.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.7e-42 175.3 84 94.0
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 4.2e-35 152.1 110 63.6
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 4.1e-30 135.6 110 60.9
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.6e-29 133.7 82 73.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.4e-22 109.8 98 55.1
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.6e-20 101.7 94 53.2
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.0e-17 94.4 113 47.8
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 6.8e-09 65.1 78 42.3


User provided reference genes

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