Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 0.0e+00 1359.7 681 100.0
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 0.0e+00 1265.4 683 93.0
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 0.0e+00 1262.3 683 92.8
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 0.0e+00 1257.7 683 92.5
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 0.0e+00 1248.0 683 91.8
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.6e-305 1051.6 689 80.1
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 9.0e-290 1000.0 695 73.2
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 2.4e-282 975.3 697 71.4
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 5.0e-240 834.7 701 61.3
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 6.8e-237 824.3 701 62.3
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 2.0e-233 812.8 706 60.5
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 1.3e-232 810.1 701 60.9
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 5.6e-231 804.7 711 60.1
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 7.3e-231 804.3 701 61.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.2e-225 786.9 704 59.1
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 1.6e-225 786.6 700 60.0
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 8.6e-224 780.8 704 57.4
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 1.6e-222 776.5 717 58.9
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 5.2e-221 771.5 699 57.4
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 3.9e-216 755.4 710 56.9
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.6e-214 750.0 707 56.9
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 1.6e-214 750.0 682 57.2
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 3.6e-214 748.8 700 58.1
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 3.6e-214 748.8 707 58.0
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.5e-212 743.4 709 55.4
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 2.2e-211 739.6 705 56.0
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.4e-210 736.1 710 56.9
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 6.0e-209 731.5 712 55.2
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 3.9e-208 728.8 615 61.3
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 8.6e-208 727.6 711 56.7
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 1.1e-207 727.2 717 54.5
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 2.5e-207 726.1 673 57.8
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 3.1e-205 719.2 711 55.4
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 8.9e-205 717.6 646 58.2
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 8.9e-205 717.6 705 54.6
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 2.6e-204 716.1 711 55.1
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 7.1e-202 708.0 636 57.7
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.3e-200 703.7 709 53.5
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 2.8e-198 696.0 667 55.0
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 6.2e-198 694.9 794 49.5
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 3.4e-196 689.1 614 58.8
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 7.6e-196 688.0 664 55.1
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 5.4e-194 681.8 658 54.1
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 9.3e-194 681.0 644 55.3
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 1.2e-193 680.6 725 51.0
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 3.9e-192 675.6 642 56.2
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 2.5e-191 672.9 689 54.6
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.8e-189 666.8 660 52.9
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 5.3e-189 665.2 714 51.4
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 6.9e-189 664.8 679 52.9
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 1.2e-188 664.1 650 54.0
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 2.9e-187 659.4 652 53.8
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 3.2e-186 656.0 641 54.9
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 7.1e-186 654.8 686 52.3
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 1.6e-185 653.7 646 53.3
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 2.1e-185 653.3 703 50.6
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 4.6e-185 652.1 687 50.2
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 6.0e-185 651.7 682 54.0
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 5.1e-184 648.7 684 51.0
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 4.3e-183 645.6 623 55.2
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 7.4e-183 644.8 616 56.2
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 2.8e-182 642.9 679 51.7
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 3.7e-182 642.5 680 51.3
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 3.7e-182 642.5 679 51.7
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 4.8e-182 642.1 680 51.5
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.4e-181 640.6 495 61.2
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 3.1e-181 639.4 635 53.1
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 9.0e-181 637.9 680 51.5
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 9.3e-178 627.9 702 49.9
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 3.3e-175 619.4 639 52.6
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.6e-174 617.1 664 50.6
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.8e-174 616.3 681 49.2
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 1.1e-173 614.4 625 53.6
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 2.1e-169 600.1 651 48.8
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 8.2e-166 588.2 503 62.6
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 8.2e-166 588.2 635 50.2
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 1.8e-165 587.0 491 61.9
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 4.1e-165 585.9 661 50.1
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 2.6e-164 583.2 530 57.5
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 4.5e-164 582.4 475 63.6
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 2.5e-162 576.6 651 49.2
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 1.4e-157 560.8 636 50.6
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 5.3e-157 558.9 665 46.5
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 1.5e-156 557.4 656 48.2
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 4.5e-156 555.8 680 46.0
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 3.6e-145 519.6 596 51.0
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.3e-139 501.1 596 49.8
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 8.5e-139 498.4 521 50.9
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 3.0e-136 490.0 489 53.2
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 4.8e-134 482.6 346 67.6
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 3.5e-132 476.5 375 64.0
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.5e-127 461.1 310 72.3
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 1.6e-116 424.5 313 66.8
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 1.4e-112 411.4 647 39.7
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.3e-110 404.8 397 56.7
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.8e-104 384.4 306 61.1
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 1.5e-98 364.8 642 36.6
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.4e-96 358.2 347 52.4
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 2.0e-95 354.4 330 56.7
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 1.7e-91 341.3 702 33.8
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 5.6e-82 309.7 375 47.5
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 9.9e-79 298.9 373 45.8
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 7.9e-76 289.3 631 33.4
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 3.3e-74 283.9 323 48.3
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 6.2e-73 279.6 307 53.4
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 6.9e-72 276.2 383 44.6
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 2.2e-70 271.2 569 34.1
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 6.4e-70 269.6 601 33.3
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 9.7e-58 229.2 327 42.2
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 3.0e-51 207.6 154 64.3
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 1.6e-44 185.3 174 53.4
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 3.3e-42 177.6 251 40.6
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 1.2e-39 169.1 201 44.8
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-38 163.3 279 37.6
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 2.6e-34 151.4 129 55.0
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 1.3e-33 149.1 120 60.8
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 3.2e-29 134.4 144 43.8
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 7.2e-29 133.3 188 43.6
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.6e-23 115.5 159 43.4
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 4.7e-20 104.0 77 68.8
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 4.4e-18 97.4 154 41.6
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 9.1e-16 89.7 53 77.4
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.6e-15 89.0 78 56.4
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 2.9e-14 84.7 298 26.5
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 5.5e-13 80.5 114 44.7
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 7.2e-13 80.1 212 30.2
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 3.6e-12 77.8 178 34.8
Mapoly0061s0136 Marchantia polymorpha HOM05D028917 ORTHO05D023487 9.8e-10 69.7 277 22.7
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 7.0e-08 63.5 65 46.2


User provided reference genes

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