Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 9.2e-83 310.5 191 100.0
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 6.4e-76 287.7 191 90.6
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.6e-74 283.1 191 90.1
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 7.6e-69 264.2 193 74.1
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 6.9e-62 241.1 189 69.3
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 7.6e-61 237.7 191 73.8
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 2.9e-60 235.7 191 69.6
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 1.1e-59 233.8 191 65.4
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 1.1e-59 233.8 189 72.5
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.5e-59 231.5 189 65.6
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.5e-59 231.5 189 65.6
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 5.5e-59 231.5 192 74.0
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 1.2e-58 230.3 189 67.2
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.6e-58 229.9 191 63.4
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.6e-58 229.9 191 66.0
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.6e-58 229.9 192 74.5
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 2.7e-58 229.2 189 66.7
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 3.5e-58 228.8 191 66.0
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 4.6e-58 228.4 194 67.5
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.3e-57 226.1 191 66.0
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 6.7e-57 224.6 191 66.0
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 6.7e-57 224.6 189 67.7
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 4.3e-56 221.9 187 63.1
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.3e-55 220.3 191 62.8
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 2.8e-55 219.2 191 67.5
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.7e-55 218.8 191 64.4
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 3.7e-55 218.8 191 63.4
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 3.7e-55 218.8 190 65.3
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.4e-54 216.9 189 61.9
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.1e-54 215.7 191 63.9
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.2e-53 213.8 191 65.4
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.2e-53 213.8 191 62.3
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 2.6e-53 212.6 191 62.8
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 2.6e-53 212.6 191 62.8
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 3.4e-53 212.2 192 77.1
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.9e-52 209.1 191 62.8
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 4.9e-52 208.4 189 58.7
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 8.4e-52 207.6 193 63.2
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 8.4e-52 207.6 191 70.7
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 8.4e-52 207.6 195 60.5
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.9e-51 206.5 191 60.7
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 2.5e-51 206.1 191 62.3
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 2.5e-51 206.1 189 57.7
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 3.2e-51 205.7 191 61.8
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 3.2e-51 205.7 191 69.6
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 3.2e-51 205.7 191 62.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.2e-50 203.8 191 61.8
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.6e-50 203.4 191 59.7
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.1e-50 203.0 188 60.6
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 5.1e-49 198.4 191 67.0
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 5.1e-49 198.4 191 59.2
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 8.7e-49 197.6 191 57.1
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.1e-48 197.2 192 59.9
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.9e-48 196.4 189 60.8
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 4.3e-48 195.3 193 59.6
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 7.4e-48 194.5 191 61.3
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 9.6e-48 194.1 189 56.6
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 9.6e-48 194.1 198 63.6
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.3e-47 193.7 241 50.6
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.6e-47 193.4 196 63.8
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 2.8e-47 192.6 181 61.9
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 6.3e-47 191.4 195 60.5
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 8.2e-47 191.0 193 59.6
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 1.2e-45 187.2 194 55.2
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.2e-45 187.2 193 58.0
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.5e-45 186.8 180 59.4
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 7.6e-45 184.5 176 67.6
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 7.6e-45 184.5 192 60.4
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 1.0e-44 184.1 191 56.0
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 1.3e-44 183.7 191 56.0
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.3e-44 183.7 190 54.2
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.7e-44 183.3 192 57.3
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 5.0e-44 181.8 187 54.5
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 1.1e-43 180.6 193 53.9
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 1.4e-43 180.3 198 55.6
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.9e-43 179.9 191 59.2
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.5e-43 179.5 189 54.5
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 5.5e-43 178.3 177 58.8
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 1.3e-41 173.7 189 50.3
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-41 173.7 192 54.2
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 3.9e-41 172.2 189 49.2
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 5.7e-40 168.3 186 51.1
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 5.7e-40 168.3 186 51.1
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 7.4e-40 167.9 189 56.1
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 7.4e-40 167.9 191 53.4
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.6e-39 166.8 189 61.4
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.6e-39 166.8 189 61.4
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 2.8e-39 166.0 189 50.8
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 6.3e-39 164.9 194 51.0
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 8.2e-39 164.5 195 50.3
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 1.1e-38 164.1 199 53.8
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 1.4e-38 163.7 191 55.5
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 3.1e-38 162.5 189 54.0
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.5e-37 160.2 192 50.0
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.6e-37 159.5 186 50.5
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 5.9e-37 158.3 189 58.2
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 7.7e-37 157.9 190 48.4
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 7.7e-37 157.9 171 52.0
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 7.7e-37 157.9 196 51.5
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 1.3e-36 157.1 199 44.2
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.7e-36 156.8 189 48.1
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 2.5e-35 152.9 217 48.8
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 1.6e-34 150.2 189 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 3.6e-34 149.1 188 45.2
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 7.9e-34 147.9 193 48.2
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 3.0e-33 146.0 190 44.2
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 3.9e-33 145.6 146 58.2
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 2.0e-32 143.3 146 57.5
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 4.4e-32 142.1 170 48.8
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 6.9e-30 134.8 212 42.9
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 2.0e-29 133.3 167 58.7
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 7.7e-29 131.3 133 58.6
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.3e-28 130.6 74 90.5
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 6.5e-28 128.3 137 51.8
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 1.9e-27 126.7 185 40.0
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 7.2e-27 124.8 83 80.7
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.6e-26 123.6 83 79.5
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 2.1e-26 123.2 144 52.1
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.4e-25 120.6 191 39.8
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 1.8e-25 120.2 144 50.0
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 3.9e-25 119.0 83 77.1
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 6.7e-25 118.2 142 50.7
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 7.4e-24 114.8 202 38.1
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 4.1e-22 109.0 77 74.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.2e-21 107.5 147 46.3
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 3.5e-21 105.9 155 49.7
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 2.9e-20 102.8 89 58.4
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 8.5e-20 101.3 116 55.2
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 4.2e-19 99.0 100 56.0
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 7.2e-19 98.2 110 53.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 1.6e-18 97.1 102 52.0
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 8.8e-17 91.3 135 45.9
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 3.3e-16 89.4 66 74.2
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 6.3e-15 85.1 84 56.0
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 3.0e-09 66.2 82 41.5
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 3.0e-09 66.2 45 71.1
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 5.7e-08 62.0 39 69.2
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 2.8e-07 59.7 41 73.2
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 4.8e-07 58.9 76 50.0
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 5.4e-06 55.5 37 73.0


User provided reference genes

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