Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0084691 Rosa chinensis HOM05D004970 ORTHO05D005665 5.8e-43 177.2 91 100.0
RcHm_v2.0_Chr4g0397231 Rosa chinensis HOM05D004970 ORTHO05D005665 1.4e-25 119.4 75 85.3
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 2.0e-19 99.0 57 89.5
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 2.0e-19 99.0 57 89.5
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 2.6e-19 98.6 57 87.7
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 5.9e-19 97.4 57 86.0
Eucgr.A02994 Eucalyptus grandis HOM05D004970 ORTHO05D005665 1.0e-18 96.7 57 86.0
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 1.0e-18 96.7 57 87.7
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 1.0e-18 96.7 57 87.7
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 1.0e-18 96.7 57 86.0
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 1.3e-18 96.3 57 84.2
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 1.7e-18 95.9 57 84.2
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 1.7e-18 95.9 57 84.2
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 1.7e-18 95.9 57 84.2
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 2.2e-18 95.5 57 86.0
Cpa.g.sc3807.1 Carica papaya HOM05D004970 ORTHO05D005665 3.8e-18 94.7 57 84.2
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 3.8e-18 94.7 57 82.5
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 5.0e-18 94.4 66 74.2
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 5.0e-18 94.4 57 82.5
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 5.0e-18 94.4 57 80.7
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 6.5e-18 94.0 57 82.5
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 8.5e-18 93.6 57 80.7
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 8.5e-18 93.6 57 80.7
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 8.5e-18 93.6 57 84.2
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 8.5e-18 93.6 57 80.7
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 1.1e-17 93.2 57 84.2
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 1.1e-17 93.2 57 82.5
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 1.1e-17 93.2 57 80.7
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 1.1e-17 93.2 57 82.5
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 1.1e-17 93.2 66 71.2
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 1.1e-17 93.2 66 71.2
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 1.1e-17 93.2 57 82.5
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 1.4e-17 92.8 57 82.5
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 1.4e-17 92.8 57 80.7
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 1.9e-17 92.4 57 84.2
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 1.9e-17 92.4 57 80.7
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 1.9e-17 92.4 57 78.9
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 2.5e-17 92.0 66 72.7
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.5e-17 92.0 57 82.5
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 2.5e-17 92.0 57 80.7
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 4.2e-17 91.3 57 80.7
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 4.2e-17 91.3 57 78.9
Dinv17237 Davidia involucrata HOM05D004970 ORTHO05D005665 4.2e-17 91.3 57 82.5
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 4.2e-17 91.3 57 80.7
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 5.5e-17 90.9 66 69.7
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 5.5e-17 90.9 57 78.9
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 5.5e-17 90.9 57 77.2
RcHm_v2.0_Chr5g0038511 Rosa chinensis HOM05D004970 ORTHO05D005665 7.2e-17 90.5 48 93.8
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 1.2e-16 89.7 56 78.6
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 1.2e-16 89.7 56 78.6
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 1.6e-16 89.4 57 77.2
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 1.6e-16 89.4 57 78.9
Nn3g19169 Nelumbo nucifera HOM05D004970 ORTHO05D005665 1.6e-16 89.4 57 80.7
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 2.1e-16 89.0 57 77.2
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 2.7e-16 88.6 57 78.9
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 2.7e-16 88.6 57 78.9
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 2.7e-16 88.6 57 75.4
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 2.7e-16 88.6 66 68.2
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 2.7e-16 88.6 57 77.2
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 3.6e-16 88.2 57 77.2
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 3.6e-16 88.2 66 68.2
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 3.6e-16 88.2 57 77.2
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 6.1e-16 87.4 57 77.2
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 6.1e-16 87.4 57 73.7
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 7.9e-16 87.0 57 75.4
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 7.9e-16 87.0 57 77.2
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 1.0e-15 86.7 56 76.8
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 1.0e-15 86.7 66 66.7
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 1.4e-15 86.3 57 73.7
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 1.4e-15 86.3 66 68.2
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 1.4e-15 86.3 66 66.7
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 1.8e-15 85.9 66 66.7
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 1.8e-15 85.9 66 66.7
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 1.8e-15 85.9 66 66.7
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.3e-15 85.5 57 71.9
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.3e-15 85.5 57 71.9
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 3.0e-15 85.1 66 66.7
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 3.0e-15 85.1 66 65.2
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 3.0e-15 85.1 66 65.2
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 3.9e-15 84.7 57 71.9
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 3.9e-15 84.7 57 73.7
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 3.9e-15 84.7 57 75.4
SGA_v2.0_scaffold18G08209 Striga asiatica HOM05D004970 ORTHO05D005665 3.9e-15 84.7 66 63.6
Actinidia24515 Actinidia chinensis HOM05D004970 ORTHO05D005665 5.1e-15 84.3 57 73.7
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 5.1e-15 84.3 66 65.2
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 6.7e-15 84.0 57 73.7
CSS0029772 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 6.7e-15 84.0 57 73.7
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 6.7e-15 84.0 66 63.6
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 6.7e-15 84.0 57 73.7
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 6.7e-15 84.0 66 65.2
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 8.8e-15 83.6 66 65.2
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 8.8e-15 83.6 65 66.2
SalBow1G3212 Salvia bowleyana HOM05D004970 ORTHO05D005665 8.8e-15 83.6 57 70.2
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 1.5e-14 82.8 66 62.1
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.5e-14 82.8 66 66.7
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.5e-14 82.8 66 66.7
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.5e-14 82.8 56 73.2
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 1.9e-14 82.4 57 75.4
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 2.5e-14 82.0 57 70.2
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 3.3e-14 81.6 56 71.4
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 3.3e-14 81.6 57 73.7
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 3.3e-14 81.6 66 65.2
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 4.3e-14 81.3 57 70.2
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 5.7e-14 80.9 56 69.6
CDE11G0972 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 7.4e-14 80.5 66 60.6
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.7e-13 79.3 57 70.2
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 1.7e-13 79.3 56 67.9
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 2.8e-13 78.6 56 67.9
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 3.7e-13 78.2 61 63.9
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 3.7e-13 78.2 56 67.9
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 6.3e-13 77.4 84 56.0
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 6.3e-13 77.4 84 56.0
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 6.3e-13 77.4 56 66.1
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 6.3e-13 77.4 56 67.9
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 1.4e-12 76.3 66 59.1
Aa31LG3G6170 Aethionema arabicum HOM05D004970 ORTHO05D005665 1.8e-12 75.9 51 72.5
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 1.8e-12 75.9 81 54.3
HanXRQChr15g0485731 Helianthus annuus HOM05D004970 ORTHO05D005665 2.4e-12 75.5 56 64.3
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 6.9e-12 73.9 57 64.9
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 1.0e-10 70.1 54 61.1
Zm00001eb415360 Zea mays HOM05D004970 ORTHO05D005665 2.2e-10 68.9 66 53.0
Zm00001eb172090 Zea mays HOM05D004970 ORTHO05D005665 5.0e-10 67.8 56 60.7
HPP92_022731 Vanilla planifolia HOM05D004970 ORTHO05D005665 6.5e-10 67.4 57 61.4
HPP92_022744 Vanilla planifolia HOM05D004970 ORTHO05D005665 6.5e-10 67.4 57 61.4
Os08g0163400 Oryza sativa ssp. japonica HOM05D004970 ORTHO05D005665 1.1e-09 66.6 56 60.7
SEGI_26324 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 2.7e-08 62.0 57 49.1
SEGI_32403 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 2.7e-08 62.0 57 49.1
CSS0044357 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 4.7e-08 61.2 79 45.6
unitig_0.g2402 Utricularia gibba HOM05D004970 ORTHO05D005665 6.7e-07 57.4 42 61.9
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 8.8e-07 57.0 42 64.3


User provided reference genes

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