Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 0.0e+00 1413.3 721 100.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1216.8 724 86.5
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 0.0e+00 1216.4 724 86.2
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1186.4 734 84.1
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1088.6 684 82.6
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.3e-291 1006.1 725 73.2
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.4e-272 942.2 720 71.0
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.4e-261 906.4 741 63.8
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 4.3e-250 868.2 744 61.2
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 3.2e-245 852.0 740 62.2
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.0e-227 792.3 750 57.6
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 9.7e-226 787.3 751 58.3
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 3.1e-224 782.3 743 58.0
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 5.3e-224 781.6 742 57.4
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 9.1e-224 780.8 746 57.0
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 7.7e-223 777.7 807 54.4
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 3.6e-220 768.8 724 58.6
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.4e-216 756.9 740 55.4
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.4e-216 755.0 740 56.1
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 3.5e-215 752.3 739 57.8
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.8e-209 732.6 738 56.6
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 8.3e-209 731.1 731 56.1
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.1e-208 730.7 738 56.4
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.6e-207 726.9 666 59.9
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 7.7e-207 724.5 738 54.2
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.0e-206 724.2 707 57.0
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.5e-205 720.3 737 53.2
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.4e-203 713.8 737 53.1
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 8.9e-203 711.1 742 51.8
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 2.2e-201 706.4 737 52.9
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 6.4e-201 704.9 741 51.8
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 8.3e-201 704.5 736 51.8
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.2e-199 700.7 735 52.2
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 3.0e-198 696.0 732 53.4
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 6.6e-198 694.9 749 51.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 2.9e-193 679.5 641 55.4
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.4e-192 677.2 760 51.4
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.6e-191 673.7 738 51.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 7.8e-191 671.4 747 50.6
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.0e-190 671.0 736 51.8
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 8.6e-190 667.9 736 52.2
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 5.6e-189 665.2 749 49.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.6e-188 663.7 735 51.6
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.7e-188 662.1 710 53.0
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 5.8e-186 655.2 740 50.5
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-185 653.7 783 48.9
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 8.3e-185 651.4 714 51.5
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 7.1e-184 648.3 780 49.1
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 9.2e-184 647.9 814 47.4
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.6e-183 647.1 683 53.3
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.3e-182 644.0 742 47.8
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.7e-182 643.7 773 49.4
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.5e-181 640.6 740 48.4
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 4.7e-180 635.6 740 48.5
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.1e-179 634.4 743 47.4
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.5e-178 630.6 738 48.2
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 7.6e-178 628.2 741 46.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.7e-177 627.1 733 46.9
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 2.4e-176 623.2 730 46.7
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 7.1e-176 621.7 724 49.9
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 2.1e-175 620.2 751 48.7
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 6.0e-175 618.6 783 45.2
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 3.0e-174 616.3 739 49.3
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.1e-173 614.4 737 48.7
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.8e-169 599.4 663 50.2
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.4e-168 596.7 744 46.2
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 9.3e-168 594.7 795 43.6
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.0e-166 591.3 741 47.8
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.3e-166 590.9 753 45.0
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.2e-164 582.0 734 46.3
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.1e-163 581.3 610 52.8
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.2e-162 577.8 711 44.9
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 1.5e-162 577.4 712 48.0
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 2.6e-162 576.6 712 48.2
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 4.9e-161 572.4 705 47.9
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.3e-157 559.3 709 45.4
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 1.3e-156 557.8 723 42.7
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.4e-155 554.3 744 42.2
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.9e-144 517.3 738 43.2
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.3e-142 510.4 672 41.8
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 2.6e-138 496.9 578 47.8
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.3e-132 478.0 527 50.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 4.5e-130 469.5 502 49.0
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.3e-129 468.0 496 55.4
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 9.4e-128 461.8 574 47.9
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.8e-126 457.6 491 52.7
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 6.3e-124 449.1 589 47.2
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.4e-120 438.0 586 45.9
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.2e-120 436.8 435 55.6
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.7e-113 414.5 738 38.3
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 5.5e-112 409.5 351 61.0
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.7e-111 407.1 348 60.6
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 4.7e-111 406.4 445 51.2
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.4e-110 404.8 425 50.8
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 5.9e-106 389.4 553 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 3.5e-98 363.6 697 33.1
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.0e-94 350.5 273 65.6
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 5.2e-94 349.7 362 55.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-93 348.2 371 53.1
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 3.7e-92 343.6 349 53.9
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 4.5e-90 336.7 299 57.2
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.6e-88 329.7 367 50.7
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.6e-87 328.2 337 51.3
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.3e-84 318.5 821 29.7
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 4.1e-83 313.5 947 29.1
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 5.4e-75 286.6 669 30.0
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 3.9e-65 253.8 247 55.1
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.2e-63 248.8 198 64.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 3.8e-60 237.3 259 55.2
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.2e-55 222.2 277 48.7
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 9.9e-53 212.6 247 49.0
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 1.4e-51 208.8 710 28.5
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.2e-51 207.6 614 28.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.2e-51 207.6 162 65.4
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 9.3e-51 206.1 159 64.2
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.1e-50 204.9 160 65.6
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 5.1e-49 200.3 271 43.9
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.4e-46 192.2 891 23.2
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.1e-42 178.3 136 66.2
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.8e-31 141.4 108 60.2
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.5e-27 127.1 98 68.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 6.7e-25 120.2 239 38.5
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 7.6e-21 106.7 164 40.2
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 3.7e-15 87.8 339 26.8
RcHm_v2.0_Chr1g0336331 Rosa chinensis HOM05D003123 ORTHO05D003492 1.0e-12 79.7 49 79.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 1.4e-11 75.9 169 32.0
RcHm_v2.0_Chr6g0290011 Rosa chinensis HOM05D005820 ORTHO05D007116 3.6e-10 71.2 35 91.4
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.1e-08 66.2 168 30.4
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 2.8e-07 61.6 129 34.1
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 5.3e-06 57.4 59 57.6


User provided reference genes

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