Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.6e-220 769.2 430 100.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.8e-172 608.2 430 81.2
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 3.1e-171 605.5 430 81.2
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-168 597.0 430 80.2
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.7e-167 591.7 430 80.5
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.4e-141 505.4 358 81.0
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 5.6e-96 355.5 451 54.5
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 5.8e-93 345.5 432 53.7
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 1.7e-92 344.0 440 55.2
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 6.7e-89 332.0 371 58.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.4e-86 324.3 468 49.8
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.5e-85 320.9 438 52.7
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.6e-85 320.1 441 52.8
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 8.4e-84 315.1 441 52.6
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.9e-83 313.9 435 52.9
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.5e-83 313.5 458 48.5
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 4.2e-83 312.8 435 51.7
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 3.5e-82 309.7 441 51.9
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 1.8e-81 307.4 431 51.0
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 3.0e-81 306.6 440 51.6
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 5.7e-80 302.4 449 49.2
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.3e-79 301.2 443 50.6
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.8e-78 297.4 449 49.2
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 3.1e-78 296.6 431 49.7
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.5e-77 294.3 440 50.0
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 5.9e-77 292.4 438 49.5
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 5.5e-75 285.8 440 49.3
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 7.2e-75 285.4 474 48.5
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.6e-74 284.3 433 48.0
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 6.1e-74 282.3 448 48.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 2.3e-73 280.4 328 58.5
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.5e-72 277.7 297 57.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 2.5e-72 276.9 450 47.6
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 1.1e-70 271.6 441 48.8
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.8e-70 270.8 450 48.0
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 4.1e-70 269.6 441 48.8
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 2.6e-69 266.9 451 48.3
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 7.7e-69 265.4 441 46.7
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.0e-68 265.0 307 57.0
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.9e-68 263.5 442 47.1
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 8.5e-68 261.9 434 47.5
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-67 261.5 448 48.4
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-67 261.5 446 49.3
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.4e-67 261.2 442 48.6
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 1.4e-67 261.2 302 57.6
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 7.2e-67 258.8 334 53.6
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 6.1e-66 255.8 299 56.9
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.5e-64 251.1 435 45.5
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.3e-63 248.1 447 46.5
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 1.1e-62 245.0 435 45.1
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 1.8e-62 244.2 446 46.4
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 4.1e-62 243.0 438 44.5
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 1.7e-60 237.7 443 44.0
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 3.8e-60 236.5 446 42.8
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 3.8e-60 236.5 439 44.0
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 5.0e-60 236.1 427 45.0
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 5.0e-60 236.1 440 46.6
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.9e-59 234.2 398 45.5
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 4.2e-59 233.0 443 44.7
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 4.2e-59 233.0 442 44.6
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 5.5e-59 232.6 437 44.2
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 9.4e-59 231.9 346 49.1
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.8e-57 227.6 437 43.9
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 2.3e-57 227.3 451 44.6
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 3.0e-57 226.9 444 43.9
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 5.7e-56 222.6 445 42.7
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 2.8e-55 220.3 317 52.4
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 4.8e-55 219.5 465 42.6
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 4.8e-55 219.5 417 42.0
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.4e-54 218.0 444 43.0
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 1.8e-54 217.6 446 43.3
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 3.1e-54 216.9 436 42.7
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 5.3e-54 216.1 431 41.8
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 2.0e-53 214.2 448 41.7
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 2.6e-53 213.8 308 49.0
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 4.5e-53 213.0 206 62.1
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 4.5e-53 213.0 330 47.6
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 8.5e-52 208.8 448 41.5
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.1e-51 208.4 208 60.6
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.2e-51 206.5 261 52.9
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 7.2e-51 205.7 350 45.7
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.0e-49 201.8 437 41.2
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 4.0e-49 199.9 425 41.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.4e-48 196.8 253 52.6
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 4.4e-48 196.4 292 46.2
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 9.8e-48 195.3 474 39.0
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 9.8e-48 195.3 330 46.4
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 2.8e-47 193.7 449 39.9
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 3.7e-47 193.4 330 45.5
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.4e-46 191.4 335 46.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.8e-46 191.0 278 49.6
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.8e-46 191.0 300 45.0
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.4e-46 190.7 288 47.9
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 2.4e-46 190.7 338 44.1
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 5.4e-46 189.5 365 41.4
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 7.0e-46 189.1 459 39.0
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 3.5e-45 186.8 488 38.3
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.7e-44 184.5 437 41.9
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 2.2e-44 184.1 366 41.8
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.9e-44 183.7 289 44.6
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 3.8e-44 183.3 331 44.4
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.6e-42 177.9 243 47.3
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 4.0e-41 173.3 438 39.0
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 5.2e-41 172.9 294 42.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 7.0e-38 162.5 159 62.3
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.6e-37 161.4 430 35.1
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.0e-37 161.0 407 40.3
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 1.0e-36 158.7 448 39.5
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 2.3e-36 157.5 532 32.7
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 1.5e-35 154.8 311 42.4
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 5.2e-33 146.4 220 46.4
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 8.3e-31 139.0 227 45.8
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 3.2e-30 137.1 288 39.2
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.0e-29 134.4 279 41.2
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 4.6e-29 133.3 193 50.8
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 5.0e-28 129.8 214 41.6
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.2e-26 125.2 205 42.9
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-26 124.0 407 36.1
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 4.7e-26 123.2 109 63.3
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 3.5e-21 107.1 207 42.5
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 2.5e-19 100.9 154 42.9
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 5.6e-19 99.8 108 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.6e-18 98.2 452 29.4
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.4e-17 95.1 66 72.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 2.1e-13 81.3 343 33.2
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 2.8e-10 70.9 151 32.5
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.1e-09 68.9 49 65.3
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 2.2e-07 61.2 131 32.8


User provided reference genes

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