Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 4.1e-93 345.1 234 100.0
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 9.9e-87 323.9 235 96.2
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 9.9e-87 323.9 235 96.2
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.9e-85 319.7 235 95.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.6e-83 311.2 238 93.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 4.3e-74 282.0 240 86.7
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 1.1e-66 257.3 232 81.9
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 5.6e-66 255.0 237 81.0
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 9.6e-66 254.2 237 81.0
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 2.8e-65 252.7 237 78.9
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 4.8e-65 251.9 237 80.6
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.4e-64 250.4 242 80.6
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 9.0e-64 247.7 239 82.0
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.2e-63 247.3 237 78.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.0e-62 244.2 239 79.1
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 3.8e-62 242.3 233 78.5
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 8.4e-62 241.1 226 79.6
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.6e-60 236.9 237 75.9
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 2.1e-60 236.5 249 64.3
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 2.7e-60 236.1 237 77.2
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 7.9e-60 234.6 233 76.0
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.3e-59 233.8 253 73.1
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 2.3e-59 233.0 238 76.1
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 3.0e-59 232.6 238 76.1
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 3.9e-59 232.3 233 76.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 8.7e-59 231.1 237 74.7
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.1e-58 230.7 233 75.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.5e-58 230.3 237 75.5
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 2.5e-58 229.6 237 76.8
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 4.3e-58 228.8 239 74.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 5.7e-58 228.4 226 77.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 9.6e-58 227.6 233 76.8
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.1e-57 226.5 206 82.5
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 4.8e-57 225.3 239 75.3
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.4e-56 223.8 237 75.5
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.4e-56 223.8 153 73.9
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 3.1e-56 222.6 218 78.0
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.1e-56 222.2 234 77.4
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 5.3e-56 221.9 242 74.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 5.3e-56 221.9 216 78.2
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 9.0e-56 221.1 238 73.9
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.5e-55 220.3 184 88.0
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.5e-55 220.3 261 57.9
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 5.9e-55 218.4 237 74.7
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 2.2e-54 216.5 235 73.2
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.2e-54 216.5 237 73.8
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 2.9e-54 216.1 237 73.8
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.8e-54 215.7 232 75.9
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.9e-53 213.4 238 73.5
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 5.5e-53 211.8 237 74.3
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 7.2e-53 211.5 211 78.2
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 7.2e-53 211.5 186 86.6
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 9.3e-53 211.1 243 72.4
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.2e-52 210.7 233 71.7
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 1.6e-52 210.3 184 86.4
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 4.6e-52 208.8 240 72.5
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 6.1e-52 208.4 237 72.6
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 7.9e-52 208.0 199 82.4
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-51 206.5 199 82.4
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.9e-51 205.7 200 81.5
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.9e-51 205.7 218 75.7
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.7e-51 204.9 200 56.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.5e-50 203.8 200 81.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.5e-50 203.8 186 87.1
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 2.5e-50 203.0 189 58.2
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 2.5e-50 203.0 189 58.2
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 3.3e-50 202.6 244 71.3
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.3e-50 202.6 238 72.7
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 3.3e-50 202.6 240 70.0
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.3e-50 202.6 234 72.6
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 5.7e-50 201.8 238 72.3
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 7.4e-50 201.4 185 85.4
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 2.8e-49 199.5 153 65.4
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 2.8e-49 199.5 236 71.6
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.8e-49 198.7 236 71.6
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 6.3e-49 198.4 198 80.3
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 8.2e-49 198.0 229 72.1
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 8.2e-49 198.0 223 74.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 1.1e-48 197.6 236 70.3
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.8e-48 196.8 213 75.1
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.8e-48 196.8 230 70.9
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 1.8e-48 196.8 197 78.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.1e-48 196.1 200 64.5
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 5.3e-48 195.3 210 75.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 5.3e-48 195.3 209 77.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 9.1e-48 194.5 185 83.2
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.0e-47 193.4 230 72.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.0e-47 193.4 226 74.8
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.6e-47 193.0 230 72.6
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 5.9e-47 191.8 237 70.5
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 5.9e-47 191.8 211 78.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 1.0e-46 191.0 236 70.8
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 1.0e-46 191.0 236 70.8
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.0e-46 191.0 229 70.3
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 2.2e-46 189.9 236 70.8
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.2e-46 189.9 157 97.5
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.9e-46 189.5 192 81.2
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 3.8e-46 189.1 213 75.1
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 5.0e-46 188.7 190 78.9
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 8.5e-46 188.0 206 75.7
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 8.5e-46 188.0 187 81.3
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.4e-45 187.2 239 66.5
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.4e-45 187.2 240 70.8
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.9e-45 186.8 226 59.7
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.9e-45 186.8 184 79.9
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.2e-45 184.9 200 53.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.4e-45 184.5 205 75.1
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 129 72.1
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 129 72.1
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 129 72.1
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 226 71.2
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-42 175.6 129 70.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-42 175.6 138 65.2
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.7e-42 175.3 127 69.3
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-41 174.1 129 70.5
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.7e-41 173.7 229 68.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.4e-40 169.9 200 70.5
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 6.9e-40 168.3 166 86.1
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.2e-39 167.5 98 79.6
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.6e-39 166.4 233 49.4
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 5.5e-37 158.7 207 63.3
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.0e-35 154.5 233 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 2.6e-34 149.8 137 59.1
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.2e-33 146.7 239 62.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.2e-31 141.0 156 80.1
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 4.5e-31 139.0 105 66.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.5e-29 132.1 77 81.8
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.1e-28 128.6 94 77.7
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.4e-19 100.9 65 72.3
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 4.7e-12 75.9 110 81.8
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 1.2e-10 71.2 80 56.2
FAN15G0173 Fragaria x ananassa HOM05D008624 ORTHO05D007117 9.8e-10 68.2 62 61.3
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.2e-09 67.0 145 34.5


User provided reference genes

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