Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.9e-47 192.2 100 100.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.3e-45 185.3 100 96.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.4e-44 181.0 100 95.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.3e-43 179.5 100 93.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.3e-39 163.7 100 90.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.2e-38 162.9 100 85.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.7e-38 161.0 100 83.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.4e-37 158.7 99 81.8
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.0e-37 157.9 102 83.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 5.8e-36 154.1 98 80.6
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 9.9e-36 153.3 91 83.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.2e-35 152.1 89 86.5
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.9e-35 151.8 98 79.6
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 3.8e-35 151.4 85 94.1
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.8e-35 151.4 88 86.4
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 4.9e-35 151.0 86 87.2
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.1e-34 149.8 89 84.3
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.4e-34 149.4 104 78.8
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.4e-34 148.7 104 76.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.4e-34 148.7 92 83.7
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.4e-34 148.7 97 80.4
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.4e-34 148.7 89 84.3
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.2e-34 148.3 97 79.4
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.2e-34 148.3 89 83.1
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.2e-34 147.9 92 80.4
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 4.2e-34 147.9 95 78.9
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 4.2e-34 147.9 100 75.0
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.2e-34 147.9 96 77.1
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.2e-34 147.9 101 78.2
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.4e-34 147.5 98 77.6
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 7.1e-34 147.1 94 78.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 9.2e-34 146.7 100 78.0
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.2e-33 146.4 88 83.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-33 146.4 89 80.9
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.2e-33 146.4 89 82.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.6e-33 146.0 83 86.7
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 2.7e-33 145.2 100 73.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.7e-33 145.2 96 76.0
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 2.7e-33 145.2 98 77.6
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 3.5e-33 144.8 92 78.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.0e-32 143.3 87 82.8
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.0e-32 143.3 99 73.7
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.0e-32 143.3 100 77.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.0e-32 143.3 101 74.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-32 142.9 100 76.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.3e-32 142.9 100 77.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.7e-32 142.5 95 78.9
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.3e-32 142.1 100 76.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.3e-32 142.1 100 70.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.3e-32 142.1 97 73.2
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 3.0e-32 141.7 98 73.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.6e-32 140.6 95 74.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.6e-32 140.6 92 78.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 8.7e-32 140.2 87 81.6
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 8.7e-32 140.2 87 81.6
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.5e-31 139.4 103 70.9
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-31 139.4 97 73.2
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.5e-31 139.4 89 77.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.9e-31 139.0 87 81.6
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.3e-31 138.3 80 85.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.3e-31 138.3 100 74.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 3.3e-31 138.3 81 87.7
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.3e-31 138.3 98 71.4
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 7.3e-31 137.1 84 79.8
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.3e-31 137.1 95 75.8
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 93 75.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 87 78.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.6e-30 136.0 86 77.9
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 84.0
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 86.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 86.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 86.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.8e-30 135.2 96 70.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 6.2e-30 134.0 86 80.2
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 6.2e-30 134.0 88 76.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.4e-29 132.9 95 70.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.4e-29 132.9 95 70.5
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.4e-29 132.9 84 81.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.4e-29 132.9 84 81.0
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.4e-29 132.9 101 71.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.8e-29 132.5 81 81.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.8e-29 132.5 84 81.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 95 68.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.1e-29 131.7 95 70.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.1e-29 131.7 95 69.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.1e-29 131.7 86 81.4
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 4.0e-29 131.3 95 68.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 4.0e-29 131.3 100 67.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 5.3e-29 131.0 95 67.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 5.3e-29 131.0 95 68.4
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 5.3e-29 131.0 95 68.4
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 5.3e-29 131.0 100 67.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 5.3e-29 131.0 78 83.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 6.9e-29 130.6 81 77.8
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 79 79.7
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.0e-28 129.0 91 70.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-28 129.0 91 70.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.0e-28 129.0 91 70.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 3.4e-28 128.3 88 73.9
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.6e-28 127.1 81 81.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.6e-28 127.1 81 81.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.6e-28 127.1 84 76.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 9.9e-28 126.7 81 72.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 9.9e-28 126.7 81 72.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 9.9e-28 126.7 81 72.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 9.9e-28 126.7 81 72.8
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 9.9e-28 126.7 73 89.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 95 65.3
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 106 67.9
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 95 65.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 95 65.3
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 80.2
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.2e-27 125.6 88 75.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 2.2e-27 125.6 81 80.2
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.9e-27 125.2 78 84.6
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.8e-27 124.8 88 75.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.9e-26 122.5 81 79.0
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 3.2e-26 121.7 84 71.4
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 3.2e-26 121.7 84 71.4
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 3.2e-26 121.7 84 71.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.2e-26 121.7 80 78.8
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.2e-26 121.7 78 83.3
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 5.4e-26 120.9 76 78.9
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.7e-25 118.6 82 72.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.0e-24 116.7 82 70.7
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 74 79.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.3e-24 116.3 76 76.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.5e-23 112.1 83 72.3
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.5e-23 112.1 83 63.9
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 9.6e-23 110.2 80 73.8
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.3e-21 104.4 88 56.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.0e-20 102.4 73 74.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.8e-20 100.9 78 65.4
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 9.9e-20 100.1 78 66.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.9e-19 97.8 72 76.4
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 5.4e-18 94.4 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.0e-17 90.9 78 62.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.8e-16 89.4 67 68.7
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.3e-16 89.0 95 53.7
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.3e-15 85.1 58 74.1
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-14 82.4 56 75.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-14 82.4 56 75.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.5e-12 74.7 83 47.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.5e-12 74.7 51 70.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.3e-08 62.4 40 77.5


User provided reference genes

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