Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 5.9e-152 540.8 269 100.0
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 2.7e-96 355.9 265 71.7
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 4.6e-96 355.1 265 70.6
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.6e-96 355.1 265 70.6
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.9e-95 352.1 265 70.2
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 5.1e-95 351.7 265 70.6
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.3e-94 348.6 265 69.8
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 4.5e-91 338.6 236 75.0
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 1.8e-84 316.6 236 70.3
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 4.0e-84 315.5 237 70.5
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.2e-83 313.9 252 67.1
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 1.2e-83 313.9 236 68.6
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 3.4e-83 312.4 235 70.2
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 4.5e-83 312.0 235 69.4
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 4.5e-83 312.0 235 68.9
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 2.2e-82 309.7 235 69.8
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 2.2e-82 309.7 235 68.9
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 4.9e-82 308.5 236 68.6
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 4.9e-82 308.5 235 69.4
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 4.9e-82 308.5 252 63.9
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 1.1e-81 307.4 233 68.7
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 3.2e-81 305.8 252 63.5
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 5.5e-81 305.1 235 67.2
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 7.1e-81 304.7 235 67.7
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.6e-80 303.5 235 67.7
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.6e-80 303.5 235 67.7
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 4.6e-80 302.0 235 69.4
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.3e-79 300.4 235 66.8
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.3e-79 300.4 236 66.9
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 2.3e-79 299.7 236 66.1
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 3.9e-79 298.9 236 66.1
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 5.1e-79 298.5 252 63.1
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 5.1e-79 298.5 235 66.8
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 8.7e-79 297.7 235 66.8
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 1.5e-78 297.0 236 66.1
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.9e-78 296.6 227 68.3
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 2.5e-78 296.2 236 65.3
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 4.3e-78 295.4 235 66.0
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 4.3e-78 295.4 236 66.9
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 5.7e-78 295.0 236 64.8
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 7.4e-78 294.7 235 66.8
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 9.6e-78 294.3 236 64.8
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.6e-77 293.5 235 67.2
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.6e-77 293.5 235 65.1
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 2.1e-77 293.1 235 66.0
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 2.1e-77 293.1 236 64.4
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 2.1e-77 293.1 236 64.8
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 2.1e-77 293.1 236 65.7
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 2.8e-77 292.7 236 64.8
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 2.8e-77 292.7 236 64.8
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 3.7e-77 292.4 235 67.2
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 6.3e-77 291.6 256 61.7
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 6.3e-77 291.6 235 66.0
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 8.2e-77 291.2 235 65.1
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.1e-76 290.8 236 66.1
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 1.1e-76 290.8 236 64.0
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 4.1e-76 288.9 235 64.3
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 6.9e-76 288.1 236 64.0
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 6.9e-76 288.1 236 64.0
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 1.5e-75 287.0 235 64.7
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 2.6e-75 286.2 234 64.5
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 7.6e-75 284.6 235 63.8
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 7.6e-75 284.6 236 63.1
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 7.6e-75 284.6 235 63.0
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 1.7e-74 283.5 235 63.8
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.7e-74 283.5 235 63.8
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 1.7e-74 283.5 235 63.0
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 2.2e-74 283.1 267 57.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 2.2e-74 283.1 235 63.0
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 2.9e-74 282.7 236 64.8
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 5.0e-74 282.0 235 63.4
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 8.5e-74 281.2 235 65.1
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 1.9e-73 280.0 235 62.6
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 1.9e-73 280.0 235 62.6
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 1.9e-73 280.0 237 62.0
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 2.5e-73 279.6 235 63.0
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 4.2e-73 278.9 235 62.6
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 5.5e-73 278.5 235 62.1
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 5.5e-73 278.5 235 62.1
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 5.5e-73 278.5 235 62.1
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 5.5e-73 278.5 219 65.8
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 5.5e-73 278.5 267 57.3
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 1.1e-70 270.8 251 58.2
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 4.3e-70 268.9 235 59.1
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 5.7e-70 268.5 235 59.1
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 1.3e-69 267.3 235 60.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 1.4e-68 263.8 218 62.4
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 4.1e-68 262.3 235 62.1
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 4.1e-68 262.3 235 62.1
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 9.1e-68 261.2 235 61.3
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.0e-66 257.7 212 62.7
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.4e-65 253.8 236 57.2
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.2e-61 240.0 236 56.4
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 1.8e-60 236.9 201 61.2
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.2e-59 234.2 236 53.0
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 7.7e-59 231.5 159 73.6
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 1.1e-54 217.6 218 51.4
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.4e-52 209.9 255 48.6
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 4.2e-49 199.1 156 67.9
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 6.1e-48 195.3 236 49.2
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 4.4e-46 189.1 160 60.0
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.2e-32 144.4 248 40.7
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 8.0e-32 141.7 274 38.0
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.4e-20 102.4 272 31.6
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 2.3e-10 70.5 177 29.4


User provided reference genes

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