Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 2.0e-127 459.1 234 100.0
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.1e-105 384.0 233 83.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.7e-102 375.2 236 81.4
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.2e-101 372.1 242 79.3
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-100 370.2 237 80.6
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.5e-98 363.2 235 80.4
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.3e-75 286.2 238 63.9
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 3.9e-67 258.8 238 60.5
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.9e-66 256.5 235 59.6
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 6.2e-65 251.5 246 58.5
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 4.0e-64 248.8 237 58.2
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.2e-63 247.3 240 58.3
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.4e-63 245.7 240 57.5
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 7.6e-63 244.6 240 57.1
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-62 243.8 243 57.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 6.5e-62 241.5 240 56.2
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 6.5e-62 241.5 240 56.2
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 3.2e-61 239.2 234 58.1
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 7.1e-61 238.0 236 55.1
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 9.3e-61 237.7 246 55.3
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.7e-60 236.1 242 54.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 7.9e-60 234.6 244 55.3
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 7.9e-60 234.6 241 55.6
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 6.7e-59 231.5 240 55.0
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 1.9e-58 229.9 234 53.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.3e-58 228.8 240 55.4
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.7e-58 228.4 142 81.7
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 7.4e-58 228.0 243 54.3
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.6e-57 226.9 220 55.5
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 2.1e-57 226.5 244 50.4
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 8.2e-57 224.6 235 54.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.1e-56 224.2 215 58.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.8e-56 223.4 243 53.1
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.8e-56 223.4 246 53.7
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.4e-56 223.0 241 54.8
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 3.1e-56 222.6 244 52.9
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 3.1e-56 222.6 245 50.2
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 4.1e-56 222.2 198 56.6
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.9e-56 221.5 244 53.7
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 9.0e-56 221.1 234 53.8
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.5e-55 220.3 247 51.4
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 2.0e-55 219.9 242 51.2
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.6e-55 219.5 245 49.8
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 3.4e-55 219.2 247 51.4
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 4.5e-55 218.8 239 54.8
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.0e-54 217.6 241 53.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.0e-54 217.6 244 52.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-54 217.2 239 51.9
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.3e-54 217.2 242 51.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.3e-54 217.2 234 52.1
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.2e-54 216.5 239 51.9
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 2.2e-54 216.5 263 49.8
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 2.9e-54 216.1 241 52.7
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 3.8e-54 215.7 245 51.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 3.8e-54 215.7 244 52.5
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 3.8e-54 215.7 179 60.9
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 5.0e-54 215.3 240 51.2
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 5.0e-54 215.3 241 52.7
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 6.5e-54 214.9 240 52.1
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 8.5e-54 214.5 238 52.5
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.1e-53 214.2 242 51.2
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.4e-53 213.8 241 51.9
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.4e-53 213.8 236 53.0
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.4e-53 213.8 244 51.2
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.9e-53 213.4 237 54.0
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.5e-53 213.0 231 53.2
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.2e-53 212.6 235 51.5
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 5.5e-53 211.8 244 50.8
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 7.2e-53 211.5 236 51.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.6e-52 210.3 159 65.4
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.6e-52 210.3 236 51.3
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.1e-52 209.9 241 49.4
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 2.1e-52 209.9 240 48.8
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 2.1e-52 209.9 219 54.8
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.7e-52 209.5 236 52.1
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 3.6e-52 209.1 222 51.8
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 4.6e-52 208.8 237 50.6
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 4.6e-52 208.8 237 50.6
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 6.1e-52 208.4 243 50.6
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.1e-52 208.4 234 51.7
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.3e-51 207.2 243 49.4
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-51 206.8 239 49.8
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.8e-51 206.8 241 53.5
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.8e-51 206.8 214 54.7
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.8e-51 206.8 236 49.2
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 3.9e-51 205.7 241 50.2
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 5.1e-51 205.3 247 49.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 8.7e-51 204.5 240 48.3
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 8.7e-51 204.5 232 48.3
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.5e-50 203.8 214 53.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 3.3e-50 202.6 249 47.4
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 5.7e-50 201.8 241 49.0
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 7.4e-50 201.4 236 47.5
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 9.7e-50 201.1 226 48.2
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.6e-49 200.3 214 53.3
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.8e-49 199.5 244 48.4
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 2.8e-49 199.5 246 48.8
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 6.3e-49 198.4 236 47.5
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 8.2e-49 198.0 238 46.6
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-48 197.2 219 51.1
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.8e-48 196.8 236 52.5
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.8e-48 196.8 234 47.4
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 4.1e-48 195.7 219 52.5
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 5.3e-48 195.3 157 61.1
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 6.9e-48 194.9 179 55.9
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 6.9e-48 194.9 234 47.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.2e-47 194.1 242 47.5
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.0e-47 193.4 208 50.5
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.0e-47 193.4 258 47.3
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.6e-47 193.0 176 57.4
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 3.4e-47 192.6 249 43.4
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 4.5e-47 192.2 244 48.8
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-46 189.9 234 48.3
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 2.2e-46 189.9 156 61.5
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.1e-45 187.6 234 47.9
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.1e-45 187.6 244 44.3
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.5e-45 186.4 236 47.5
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.5e-45 186.4 247 45.3
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 5.5e-45 185.3 239 48.5
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 7.2e-45 184.9 196 59.2
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 2.7e-44 183.0 238 48.3
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.6e-44 182.6 234 44.9
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.9e-43 179.1 234 46.2
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.7e-43 178.3 234 44.4
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 8.8e-43 177.9 234 43.2
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.1e-42 177.6 173 54.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 5.7e-42 175.3 234 45.7
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 3.7e-41 172.6 259 43.6
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.2e-41 171.4 236 44.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 6.9e-40 168.3 134 64.2
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 2.6e-39 166.4 209 44.5
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.3e-38 164.1 150 56.7
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.3e-38 164.1 219 42.5
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 5.0e-38 162.2 240 45.8
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 2.7e-36 156.4 153 56.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.3e-34 149.4 237 41.4
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.7e-34 148.7 246 39.0
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 5.5e-29 132.1 133 51.1
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.6e-28 130.6 230 39.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 4.0e-27 125.9 206 39.8
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 7.5e-26 121.7 67 85.1
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 9.7e-26 121.3 230 35.2
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 2.2e-22 110.2 77 70.1
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 5.0e-22 109.0 55 90.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 8.5e-22 108.2 58 86.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-20 104.4 58 77.6
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 4.0e-19 99.4 197 40.6
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-17 94.4 198 38.9
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.4e-16 90.9 46 91.3
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.3e-14 84.3 91 52.7
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 6.5e-14 82.0 87 49.4
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.2e-13 78.6 38 92.1
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.7e-10 68.9 86 47.7
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.3e-09 67.8 49 61.2
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.1e-08 64.7 68 44.1
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 5.4e-08 62.4 30 93.3
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.0e-06 58.2 151 33.8
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 2.3e-06 57.0 100 41.0
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 2.3e-06 57.0 85 41.2


User provided reference genes

Program Settings