Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377071 Rosa chinensis HOM05D002077 ORTHO05D000818 1.7e-67 259.2 130 100.0
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.1e-46 189.1 131 74.8
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.6e-46 188.3 131 74.0
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 3.6e-46 188.3 131 74.0
FvH4_7g29321 Fragaria vesca HOM05D002077 ORTHO05D000818 3.6e-38 161.8 132 66.7
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 3.2e-34 148.7 129 61.2
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 2.1e-33 146.0 123 59.3
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 1.7e-32 142.9 123 58.5
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.3e-32 142.5 123 57.7
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.3e-32 142.5 123 58.5
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 2.3e-32 142.5 123 58.5
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 3.9e-32 141.7 121 63.6
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 8.6e-32 140.6 125 58.4
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.1e-31 140.2 120 58.3
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 1.9e-31 139.4 121 60.3
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.9e-31 139.4 121 60.3
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.9e-31 139.4 121 60.3
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 2.5e-31 139.0 119 58.0
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 5.6e-31 137.9 120 59.2
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 1.2e-30 136.7 121 61.2
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.6e-30 136.3 123 57.7
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.6e-30 136.3 118 55.1
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.1e-30 136.0 120 59.2
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 2.8e-30 135.6 120 59.2
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 2.8e-30 135.6 123 56.9
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 6.2e-30 134.4 123 56.9
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 6.2e-30 134.4 120 57.5
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 8.1e-30 134.0 123 56.1
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 8.1e-30 134.0 121 59.5
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 8.1e-30 134.0 120 57.5
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 1.1e-29 133.7 123 56.9
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 1.4e-29 133.3 123 56.9
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 1.4e-29 133.3 121 60.3
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 1.8e-29 132.9 123 55.3
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 2.3e-29 132.5 125 58.4
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 3.1e-29 132.1 120 57.5
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 3.1e-29 132.1 114 58.8
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 3.1e-29 132.1 121 57.0
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 5.2e-29 131.3 119 60.5
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 5.2e-29 131.3 125 56.0
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 8.9e-29 130.6 120 57.5
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 8.9e-29 130.6 121 59.5
PGSC0003DMG402014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 8.9e-29 130.6 121 57.9
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 8.9e-29 130.6 122 55.7
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 1.5e-28 129.8 114 57.0
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 2.0e-28 129.4 114 56.1
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 2.0e-28 129.4 122 55.7
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 2.6e-28 129.0 126 53.2
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 2.6e-28 129.0 120 55.0
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 2.6e-28 129.0 114 57.9
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 5.8e-28 127.9 114 57.0
HanXRQChr15g0495581 Helianthus annuus HOM05D002077 ORTHO05D000818 5.8e-28 127.9 114 53.5
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 5.8e-28 127.9 114 53.5
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 5.8e-28 127.9 123 57.7
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 5.8e-28 127.9 120 55.0
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 7.5e-28 127.5 126 52.4
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 7.5e-28 127.5 126 52.4
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 1.3e-27 126.7 119 55.5
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 1.7e-27 126.3 126 53.2
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 3.7e-27 125.2 121 57.9
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 3.7e-27 125.2 121 57.9
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 6.4e-27 124.4 121 56.2
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.1e-26 123.6 120 51.7
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 1.1e-26 123.6 121 54.5
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 1.1e-26 123.6 123 52.8
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 2.4e-26 122.5 121 57.0
Oeu035467.1 Olea europaea HOM05D002077 ORTHO05D000818 2.4e-26 122.5 125 55.2
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.2e-26 122.1 121 54.5
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 3.2e-26 122.1 123 51.2
Actinidia32869 Actinidia chinensis HOM05D002077 ORTHO05D000818 4.1e-26 121.7 111 57.7
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 5.4e-26 121.3 123 53.7
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 5.4e-26 121.3 123 52.8
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 7.1e-26 120.9 121 56.2
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 7.1e-26 120.9 125 53.6
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 9.2e-26 120.6 121 50.4
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 1.6e-25 119.8 123 50.4
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.6e-25 119.8 120 50.8
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 2.1e-25 119.4 121 53.7
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 2.1e-25 119.4 115 56.5
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.1e-25 119.4 121 55.4
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 3.5e-25 118.6 118 47.5
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.5e-25 118.6 129 50.4
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 3.5e-25 118.6 118 50.0
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.6e-25 118.2 121 52.1
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 6.0e-25 117.9 120 52.5
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 7.8e-25 117.5 120 52.5
TPR.G14336 Trifolium pratense HOM05D002077 ORTHO05D000818 7.8e-25 117.5 121 53.7
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 1.0e-24 117.1 118 50.0
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 1.0e-24 117.1 118 50.0
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 1.0e-24 117.1 118 50.0
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 1.0e-24 117.1 120 53.3
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 1.7e-24 116.3 119 50.4
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.3e-24 115.9 121 54.5
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 2.3e-24 115.9 118 50.0
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 3.0e-24 115.5 118 49.2
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 3.0e-24 115.5 122 53.3
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.0e-24 115.5 129 49.6
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 3.9e-24 115.2 118 48.3
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 3.9e-24 115.2 132 50.0
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.9e-24 115.2 116 53.4
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 3.9e-24 115.2 120 49.2
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 5.1e-24 114.8 119 49.6
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 5.1e-24 114.8 119 49.6
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 6.6e-24 114.4 118 49.2
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 6.6e-24 114.4 118 49.2
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 8.6e-24 114.0 120 51.7
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.1e-23 113.6 116 49.1
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.1e-23 113.6 122 51.6
Medtr4g099030 Medicago truncatula HOM05D002077 ORTHO05D000818 2.5e-23 112.5 123 50.4
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 2.5e-23 112.5 116 48.3
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.5e-23 112.5 116 54.3
AL6G35000 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 3.3e-23 112.1 123 45.5
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 3.3e-23 112.1 114 53.5
PGSC0003DMG400030223 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.3e-23 112.1 129 48.8
Medtr0013s0100 Medicago truncatula HOM05D002077 ORTHO05D000818 5.6e-23 111.3 121 51.2
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 7.3e-23 110.9 118 46.6
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 2.1e-22 109.4 118 44.9
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 2.8e-22 109.0 118 44.1
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 2.8e-22 109.0 114 50.0
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 3.6e-22 108.6 118 44.9
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 4.7e-22 108.2 122 45.1
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 3.1e-21 105.5 119 48.7
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 6.8e-21 104.4 114 51.8
MD09G1056800 Malus domestica HOM05D002077 ORTHO05D000818 1.3e-19 100.1 100 49.0
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 1.7e-19 99.8 120 42.5
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 2.2e-19 99.4 119 47.1
PGSC0003DMG400024052 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.9e-19 99.0 128 45.3
MBI18_g45107_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 6.4e-19 97.8 115 47.0
TPR.G34129 Trifolium pratense HOM05D002077 ORTHO05D000818 7.1e-18 94.4 119 44.5
MD07G1267500 Malus domestica HOM05D002077 ORTHO05D000818 9.2e-18 94.0 120 46.7
Psat7g237200 Pisum sativum HOM05D002077 ORTHO05D000818 1.2e-17 93.6 121 44.6
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 6.0e-17 91.3 96 54.2
CAN.G1704.4 Capsicum annuum HOM05D002077 ORTHO05D000818 7.8e-17 90.9 109 49.5
Psat7g237160 Pisum sativum HOM05D002077 ORTHO05D000818 7.8e-17 90.9 121 43.8
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 3.9e-16 88.6 115 43.5
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 3.9e-16 88.6 119 43.7
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.1e-15 87.0 122 37.7
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.1e-15 87.0 122 40.2
Thhalv10015605m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.3e-15 85.1 122 37.7
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 5.6e-15 84.7 122 36.9
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.6e-15 84.0 123 39.0
MD09G1057300 Malus domestica HOM05D002077 ORTHO05D000818 2.1e-14 82.8 121 44.6
CARHR189810 Cardamine hirsuta HOM05D002077 ORTHO05D000818 4.8e-14 81.6 118 44.9
Sabra12G0103300 Salix brachista HOM05D002077 ORTHO05D000818 4.8e-14 81.6 60 61.7
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.4e-13 80.1 77 55.8
Solyc03g062800.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.8e-13 79.7 91 49.5
CSS0043009 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 3.1e-13 79.0 125 41.6
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 3.1e-13 79.0 114 41.2
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 4.0e-13 78.6 116 43.1
HPP92_008440 Vanilla planifolia HOM05D002077 ORTHO05D000818 2.6e-12 75.9 86 41.9
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 9.9e-12 73.9 92 43.5
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 9.9e-12 73.9 115 37.4
FAN08G0385 Fragaria x ananassa HOM05D000500 ORTHO05D000367 2.9e-11 72.4 115 35.7
PGSC0003DMG400014362 Solanum tuberosum HOM05D002077 ORTHO05D000818 6.4e-11 71.2 100 43.0
MD06G1077200 Malus domestica HOM05D002077 ORTHO05D000818 1.4e-10 70.1 132 33.3
PGSC0003DMG400030221 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.4e-10 69.3 76 47.4
Solyc03g026400.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 4.2e-10 68.6 89 47.2
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.6e-09 66.6 110 39.1
FvH4_5g01901 Fragaria vesca HOM05D002077 ORTHO05D000818 3.9e-08 62.0 119 32.8
FvH4_5g01910 Fragaria vesca HOM05D002077 ORTHO05D000818 3.9e-08 62.0 119 35.3
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 2.5e-07 59.3 84 42.9
FAN03G3408 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.3e-07 58.9 48 52.1
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 4.3e-07 58.5 118 33.1
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 5.6e-07 58.2 119 34.5
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 7.3e-07 57.8 120 35.8
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 2.8e-06 55.8 116 34.5
AL6G46100 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 4.8e-06 55.1 118 33.1


User provided reference genes

Program Settings