Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 8.7e-144 513.8 301 100.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-130 468.0 300 91.3
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.1e-129 466.1 301 91.0
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-122 441.4 284 91.9
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.1e-122 441.0 284 91.9
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.3e-122 440.7 284 91.5
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-118 429.5 284 90.1
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-118 429.1 290 88.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 4.1e-93 345.5 300 73.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 5.0e-91 338.6 299 63.9
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.5e-90 336.3 302 62.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 3.2e-90 335.9 256 70.3
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 5.5e-90 335.1 259 74.1
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 5.5e-90 335.1 259 74.1
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 7.2e-90 334.7 302 62.6
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 9.7e-87 324.3 309 68.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-86 323.9 306 64.4
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.8e-86 322.0 269 77.0
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.4e-85 320.5 304 65.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.4e-85 319.7 265 66.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 4.1e-85 318.9 260 67.3
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.3e-85 318.5 289 62.3
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.0e-85 318.2 289 62.3
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.2e-84 317.4 304 66.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.7e-84 316.2 304 63.2
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 3.5e-84 315.8 257 67.7
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 3.5e-84 315.8 302 65.9
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 4.5e-84 315.5 304 63.5
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.5e-84 315.5 289 60.9
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 5.9e-84 315.1 305 63.6
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.3e-83 313.9 305 60.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.7e-83 313.5 299 60.2
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.7e-83 313.5 305 57.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.7e-83 313.5 300 59.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.8e-83 312.4 311 63.3
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 8.5e-83 311.2 300 59.3
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.5e-82 309.7 265 64.2
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-81 307.4 311 63.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.8e-80 301.6 310 61.0
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 6.8e-80 301.6 247 65.2
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.6e-79 299.7 299 60.9
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 3.4e-79 299.3 257 66.9
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.4e-79 298.9 256 65.2
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.4e-79 298.9 256 65.2
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 4.4e-79 298.9 257 68.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 5.7e-79 298.5 305 62.6
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 9.8e-79 297.7 300 57.3
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.3e-78 297.4 262 66.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 3.7e-78 295.8 257 64.6
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.4e-77 293.9 305 60.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.4e-77 293.9 295 61.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.4e-77 293.1 261 60.2
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 4.1e-77 292.4 257 66.1
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.1e-77 292.4 263 61.2
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.4e-77 292.0 261 60.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.0e-77 291.6 260 62.3
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 9.1e-77 291.2 261 59.8
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 9.1e-77 291.2 257 65.8
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.2e-76 290.8 257 66.1
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.0e-76 290.0 263 65.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.7e-76 289.7 256 62.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 3.5e-76 289.3 257 60.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.9e-76 288.5 263 59.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.3e-75 287.3 259 64.5
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 6.6e-75 285.0 263 61.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 6.6e-75 285.0 263 62.0
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 8.6e-75 284.6 256 63.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.5e-74 283.1 256 63.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.5e-74 283.1 256 64.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.5e-74 283.1 259 66.4
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 3.3e-74 282.7 259 66.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 4.2e-74 282.3 264 60.6
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.2e-74 281.6 257 65.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.2e-74 281.6 259 66.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-73 280.8 257 63.4
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-73 280.8 295 58.0
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.6e-73 279.3 293 56.3
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 4.7e-73 278.9 255 61.2
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 4.7e-73 278.9 256 63.7
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 6.1e-73 278.5 261 64.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.1e-73 278.5 257 64.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 6.1e-73 278.5 260 64.6
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-72 277.3 260 64.2
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.4e-72 277.3 263 59.7
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.8e-72 276.9 261 61.3
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.8e-72 276.9 256 62.1
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.0e-72 276.2 293 55.3
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 5.2e-72 275.4 255 63.1
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 5.2e-72 275.4 255 60.8
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 6.8e-72 275.0 262 63.0
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.8e-72 275.0 266 59.8
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 6.8e-72 275.0 254 58.3
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 8.9e-72 274.6 262 58.0
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.4e-71 272.7 255 59.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 4.4e-71 272.3 262 62.6
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.4e-71 272.3 263 58.9
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 5.7e-71 271.9 256 62.5
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 5.7e-71 271.9 256 62.5
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 5.7e-71 271.9 256 62.5
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.8e-71 271.2 266 59.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.7e-70 270.4 262 63.4
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.7e-70 270.4 262 60.3
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.8e-69 266.9 257 59.5
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.4e-69 266.5 245 61.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 9.2e-69 264.6 306 54.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.2e-68 264.2 255 58.8
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.0e-67 261.2 295 55.9
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.0e-67 261.2 261 57.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.7e-67 260.4 255 57.3
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 2.3e-67 260.0 266 56.8
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.9e-67 259.6 266 56.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.0e-67 258.8 265 58.1
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 7.3e-66 255.0 257 61.1
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.7e-65 252.3 268 59.7
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.7e-65 252.3 238 60.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.9e-64 248.1 307 56.4
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-63 247.3 256 60.9
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.8e-63 245.4 256 60.5
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.2e-61 239.6 261 58.2
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 7.0e-61 238.4 257 59.1
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.0e-60 236.9 290 57.9
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.7e-59 233.8 290 53.8
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 3.0e-59 233.0 256 57.0
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.0e-59 232.3 305 48.5
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.6e-59 231.9 218 64.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 4.3e-58 229.2 256 56.6
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.1e-56 224.6 294 50.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.8e-56 223.8 263 51.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.0e-56 222.6 306 50.3
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 6.8e-56 221.9 286 57.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.5e-55 220.7 205 62.0
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.4e-55 219.5 251 55.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.1e-53 212.6 246 54.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 7.8e-52 208.4 242 55.0
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.5e-50 203.4 197 60.9
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 4.0e-48 196.1 247 45.7
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.7e-46 190.7 234 48.7
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.1e-44 183.7 198 60.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.0e-43 181.4 148 64.9
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.3e-42 176.4 300 41.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.2e-41 174.5 232 45.3
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.2e-41 172.2 112 69.6
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.1e-41 171.8 181 64.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 8.1e-41 171.8 256 46.5
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.3e-38 164.5 148 61.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-37 161.0 158 61.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.4e-37 161.0 215 49.8
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 2.4e-37 160.2 259 41.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.2e-37 159.5 169 56.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.2e-37 159.5 169 56.8
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 7.1e-37 158.7 169 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 4.6e-36 156.0 284 38.0
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.0e-35 154.8 257 42.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.0e-35 154.8 139 54.0
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.7e-35 154.1 157 51.6
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.1e-34 151.4 189 58.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.6e-33 147.5 118 61.9
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.6e-33 147.5 245 37.1
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 6.2e-33 145.6 262 37.8
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 8.1e-33 145.2 152 57.9
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 8.4e-30 135.2 205 40.0
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 2.7e-28 130.2 237 38.8
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.3e-26 123.2 263 34.6
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.9e-24 115.5 154 46.1
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 7.6e-23 112.1 194 42.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.0e-20 102.4 81 74.1
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.9e-20 102.1 99 54.5
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.5e-18 97.8 126 50.0
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.8e-17 93.6 72 66.7
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.2e-17 92.4 127 51.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-16 91.3 81 66.7
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-15 87.0 94 57.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.4e-15 86.7 75 57.3
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 3.4e-15 86.7 58 81.0
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-14 84.7 59 72.9
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.3e-11 74.7 62 64.5
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.1e-11 72.8 241 29.5
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.9e-10 70.9 115 47.0
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 6.2e-09 65.9 48 68.8
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 4.0e-08 63.2 256 28.1
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 7.6e-07 58.9 115 39.1
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 6.5e-06 55.8 99 37.4


User provided reference genes

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