Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 3397.4 1763 100.0
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 3036.9 1770 89.1
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 3035.4 1787 88.2
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 3024.2 1801 87.6
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 3017.6 1801 87.6
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 2994.9 1801 87.0
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2542.7 1792 74.7
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2508.8 1792 73.9
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2043.9 1806 61.0
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 1972.6 1807 59.6
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 1969.1 1853 59.0
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 1893.2 1814 57.3
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 1889.4 1804 56.7
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 1872.8 1808 56.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 1871.7 1811 56.5
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 1847.0 1803 56.6
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 1843.6 1823 56.0
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1816.2 1805 55.8
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 1803.5 1807 55.4
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 1801.9 1831 54.8
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1789.2 1849 55.7
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1776.9 1804 55.2
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1774.6 1804 54.0
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1774.6 1891 53.8
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1770.4 1793 53.5
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 1766.5 1811 54.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1748.8 1849 52.9
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1745.7 1828 52.6
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1744.6 1808 53.3
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1743.8 1828 52.4
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1735.3 1808 53.2
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 1724.5 1904 51.7
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1719.1 1806 52.2
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1711.0 1798 53.0
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1704.9 1802 52.7
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1702.2 1802 52.6
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1695.2 1800 52.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1695.2 1786 52.9
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1686.4 1831 51.3
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1685.6 1811 51.6
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 1652.1 1823 50.9
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1639.8 1803 51.4
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1632.1 1820 49.9
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1625.1 1605 55.5
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1620.1 1815 50.4
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1612.4 1802 50.7
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1611.7 1814 49.8
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1603.6 1767 51.3
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1603.2 1822 51.6
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1587.8 1824 50.3
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1587.4 1803 48.4
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1582.0 1803 49.5
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1578.1 1803 48.3
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1575.8 1809 49.3
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1568.5 1870 48.1
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1556.2 1803 48.4
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1519.6 1693 50.3
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1503.4 1868 46.6
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1502.6 1804 47.0
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1500.0 1804 49.4
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1495.3 1814 47.1
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1493.4 1814 47.2
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1490.3 1874 46.4
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1489.9 1807 47.4
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1486.9 1887 46.2
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1468.0 1877 45.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1466.1 1807 47.1
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1461.0 1800 48.4
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1460.7 1791 46.6
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1459.5 1872 45.1
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1457.6 1800 47.2
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1454.5 1809 46.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1454.1 1808 46.1
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1452.2 1809 45.9
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1450.3 1874 45.1
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1442.2 1880 44.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1441.4 1874 46.1
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1437.9 1837 45.7
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1434.1 1855 45.7
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1430.6 1839 45.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1427.9 1840 45.5
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1427.2 1870 44.9
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1425.6 1838 45.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1418.7 1872 44.9
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1416.0 1834 45.1
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1402.1 1421 55.6
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1349.3 1825 44.3
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1345.1 1899 42.7
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1313.1 1581 47.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1296.2 1829 44.0
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1294.3 1521 48.5
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1285.8 1961 41.3
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1209.1 1824 40.2
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1177.2 1457 47.2
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1108.2 1825 39.2
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1079.7 626 88.0
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.4e-305 1053.9 1061 55.4
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.2e-296 1024.2 984 58.9
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.4e-288 995.7 1661 38.7
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 7.8e-277 958.4 1024 52.4
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-261 907.9 1421 41.9
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.3e-251 872.8 1212 43.6
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-230 804.7 814 55.7
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.7e-228 795.8 723 59.6
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 7.7e-208 729.2 824 48.4
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-207 728.0 841 51.4
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-206 725.3 850 51.9
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 4.8e-194 683.3 1838 29.7
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 1.4e-193 681.8 1856 30.0
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.0e-183 646.7 796 50.1
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 3.7e-162 577.4 1768 28.2
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 5.1e-159 567.0 1726 26.9
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 7.8e-152 543.1 2004 26.1
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-142 512.7 698 46.3
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 9.6e-118 429.9 868 36.3
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.9e-115 420.6 609 44.2
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 9.3e-113 413.3 806 34.7
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.6e-112 412.5 763 38.0
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 9.4e-105 386.7 469 48.0
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.9e-103 381.3 404 54.5
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 2.8e-93 348.6 370 48.6
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 7.5e-86 323.9 259 64.9
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 7.7e-83 313.9 308 56.8
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 1.3e-82 313.2 621 34.5
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.1e-80 304.3 505 42.2
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.1e-76 291.6 380 46.3
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 2.7e-75 288.9 314 46.8
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 3.8e-74 285.0 275 56.4
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.7e-69 269.6 230 62.2
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 2.8e-69 268.9 484 38.0
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.1e-68 266.9 217 61.8
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.6e-58 231.1 333 44.7
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.8e-55 223.0 1005 25.0
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 5.4e-52 211.5 334 39.5
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 3.3e-49 202.2 288 47.2
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 5.8e-46 191.4 127 73.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 3.0e-42 179.1 271 39.9
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 4.3e-41 175.3 277 36.5
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 1.2e-40 173.7 145 58.6
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 1.5e-38 166.8 115 70.4
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 9.9e-38 164.1 148 56.8
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 4.1e-36 158.7 689 22.9
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 4.1e-36 158.7 233 39.9
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.7e-34 153.3 201 45.3
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.5e-33 149.4 308 36.4
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.6e-32 145.6 261 37.5
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.2e-32 144.8 94 74.5
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.1e-31 144.1 287 32.8
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 7.1e-28 131.3 191 47.1
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.6e-27 128.6 1326 21.3
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.3e-26 126.3 221 31.2
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.3e-24 120.6 185 40.5
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 1.3e-24 120.6 191 37.2
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 3.6e-24 119.0 145 43.4
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 6.9e-23 114.8 296 31.4
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 9.9e-22 110.9 121 50.4
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.9e-21 109.4 121 49.6
Ah.05g175250 Amaranthus hybridus HOM05D003586 ORTHO05D004036 1.1e-20 107.5 126 39.7
RcHm_v2.0_Chr1g0354361 Rosa chinensis HOM05D003586 ORTHO05D004036 2.5e-17 96.3 66 77.3
RcHm_v2.0_Chr5g0059891 Rosa chinensis HOM05D003586 ORTHO05D004036 9.6e-17 94.4 56 83.9
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 8.1e-16 91.3 201 34.3
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 1.2e-14 87.4 74 64.9
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.7e-13 83.6 86 52.3
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.7e-13 83.6 126 38.9
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 8.4e-13 81.3 922 20.1
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 7.1e-12 78.2 60 61.7
BolC5t34135H Brassica oleracea HOM05D003586 ORTHO05D004036 4.6e-11 75.5 160 33.1
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.0e-10 74.3 148 33.8
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 2.3e-10 73.2 99 41.4
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 5.1e-10 72.0 75 40.0
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 6.7e-10 71.6 58 56.9
BcaC05g29194 Brassica carinata HOM05D000558 ORTHO05D001857 4.0e-07 62.4 126 31.7
RcHm_v2.0_Chr3g0476201 Rosa chinensis HOM05D003586 ORTHO05D348515 2.0e-06 60.1 56 60.7


User provided reference genes

Program Settings