Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373441 Rosa chinensis HOM05D007129 ORTHO05D008680 4.7e-73 277.7 136 100.0
FvH4_5g16440 Fragaria vesca HOM05D007129 ORTHO05D008680 1.6e-28 129.8 68 94.1
FAN13G1816 Fragaria x ananassa HOM05D007129 ORTHO05D008680 1.6e-28 129.8 68 94.1
FAN18G4566 Fragaria x ananassa HOM05D007129 ORTHO05D008680 1.6e-28 129.8 68 94.1
FAN08G0536 Fragaria x ananassa HOM05D002131 ORTHO05D002141 3.5e-28 128.6 68 92.6
RcHm_v2.0_Chr3g0449251 Rosa chinensis HOM05D007129 ORTHO05D008680 4.6e-28 128.3 68 92.6
RcHm_v2.0_Chr7g0179661 Rosa chinensis HOM05D007129 ORTHO05D008680 7.9e-28 127.5 68 92.6
Prupe.5G178800 Prunus persica HOM05D007129 ORTHO05D008680 1.1e-24 117.1 68 82.4
Dinv09179 Davidia involucrata HOM05D007129 ORTHO05D008680 1.4e-24 116.7 68 82.4
Cpa.g.sc35.61 Carica papaya HOM05D007129 ORTHO05D008680 1.8e-24 116.3 67 83.6
GSVIVG01007819001 Vitis vinifera HOM05D007129 ORTHO05D008680 1.8e-24 116.3 68 82.4
CSS0035860 Camellia sinensis var. sinensis HOM05D007129 ORTHO05D008680 5.3e-24 114.8 68 82.4
QL10p012428 Quercus lobata HOM05D007129 ORTHO05D008680 9.0e-24 114.0 68 82.4
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 1.2e-23 113.6 68 80.9
MD06G1180800 Malus domestica HOM05D007129 ORTHO05D008680 1.5e-23 113.2 68 80.9
Lj9A453T29 Lonicera japonica HOM05D007129 ORTHO05D008680 2.6e-23 112.5 68 77.9
Cfa019070 Carpinus fangiana HOM05D007129 ORTHO05D008680 3.4e-23 112.1 68 79.4
Hma1.2p1_1643F.1_g295180 Hydrangea macrophylla HOM05D007129 ORTHO05D008680 5.9e-23 111.3 69 78.3
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 7.6e-23 110.9 68 80.9
arahy.Tifrunner.gnm1.ann1.JUK8XQ Arachis hypogaea HOM05D007129 ORTHO05D008680 7.6e-23 110.9 68 77.9
arahy.Tifrunner.gnm1.ann1.N0S5JS Arachis hypogaea HOM05D007129 ORTHO05D008680 7.6e-23 110.9 68 77.9
Atru.chr9.2406 Acer truncatum HOM05D007129 ORTHO05D008680 1.7e-22 109.8 68 77.9
Haze_07441 Corylus avellana HOM05D007129 ORTHO05D008680 2.2e-22 109.4 68 77.9
Manes.06G101100 Manihot esculenta HOM05D007129 ORTHO05D008680 2.9e-22 109.0 69 75.4
Rhsim12G0161900 Rhododendron simsii HOM05D007129 ORTHO05D008680 2.9e-22 109.0 68 77.9
Lsat_1_v5_gn_4_73321 Lactuca sativa HOM05D007129 ORTHO05D008680 3.8e-22 108.6 68 76.5
CiPaw.11G031300 Carya illinoinensis HOM05D007129 ORTHO05D008680 5.0e-22 108.2 68 77.9
HanXRQChr09g0271771 Helianthus annuus HOM05D007129 ORTHO05D008680 5.0e-22 108.2 68 75.0
CANSAT80G0701 Cannabis sativa HOM05D007129 ORTHO05D008680 6.5e-22 107.8 69 73.9
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 6.5e-22 107.8 68 75.0
TAR629G0718 Trochodendron aralioides HOM05D007129 ORTHO05D008680 6.5e-22 107.8 68 76.5
Lj4g0013003 Lotus japonicus HOM05D007129 ORTHO05D008680 8.5e-22 107.5 68 76.5
Medtr4g106380 Medicago truncatula HOM05D007129 ORTHO05D008680 8.5e-22 107.5 69 75.4
ECA232G1293 Erigeron canadensis HOM05D000306 ORTHO05D000410 2.5e-21 105.9 68 73.5
Gohir.A12G276500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 2.5e-21 105.9 68 75.0
AUR62031041 Chenopodium quinoa HOM05D002131 ORTHO05D008680 4.2e-21 105.1 68 75.0
PGR044G2359 Punica granatum HOM05D007129 ORTHO05D008680 4.2e-21 105.1 68 75.0
Eucgr.K02877 Eucalyptus grandis HOM05D007129 ORTHO05D008680 5.5e-21 104.8 68 75.0
Gohir.D12G277500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 5.5e-21 104.8 68 73.5
Thecc.03G005100 Theobroma cacao HOM05D007129 ORTHO05D008680 5.5e-21 104.8 68 72.1
Psat4g055920 Pisum sativum HOM05D007129 ORTHO05D008680 7.2e-21 104.4 69 72.5
Ciclev10021561m.g Citrus clementina HOM05D007129 ORTHO05D008680 9.4e-21 104.0 68 72.1
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 9.4e-21 104.0 68 72.1
Duzib068G0087 Durio zibethinus HOM05D007129 ORTHO05D008680 9.4e-21 104.0 68 72.1
Sc12g0005690 Simmondsia chinensis HOM05D007129 ORTHO05D008680 9.4e-21 104.0 68 73.5
Potri.015G071300 Populus trichocarpa HOM05D007129 ORTHO05D008680 1.2e-20 103.6 68 73.5
Sabra15G0095300 Salix brachista HOM05D007129 ORTHO05D008680 1.2e-20 103.6 68 73.5
Sabra15G0096300 Salix brachista HOM05D007129 ORTHO05D008680 1.2e-20 103.6 68 73.5
Lalb_Chr12g0201391 Lupinus albus HOM05D007129 ORTHO05D008680 1.6e-20 103.2 68 72.1
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 2.7e-20 102.4 68 70.6
Oeu016337.1 Olea europaea HOM05D007129 ORTHO05D008680 2.7e-20 102.4 67 70.1
VMungo1215G0430 Vigna mungo HOM05D007129 ORTHO05D008680 2.7e-20 102.4 68 72.1
AUR62008280 Chenopodium quinoa HOM05D007129 ORTHO05D008680 3.6e-20 102.1 68 72.1
Duzib205G1103 Durio zibethinus HOM05D007129 ORTHO05D008680 3.6e-20 102.1 68 73.5
Ca_21890_v3 Cicer arietinum L. HOM05D007129 ORTHO05D008680 6.1e-20 101.3 68 73.5
Cc00_g15150 Coffea canephora HOM05D007129 ORTHO05D008680 6.1e-20 101.3 68 69.1
Migut.D01914 Erythranthe guttata HOM05D007129 ORTHO05D008680 7.9e-20 100.9 69 68.1
Glyma.U031407 Glycine max HOM05D007129 ORTHO05D008680 7.9e-20 100.9 68 70.6
Hund02711 Selenicereus undatus HOM05D007129 ORTHO05D008680 7.9e-20 100.9 68 72.1
Phvul.003G197200 Phaseolus vulgaris HOM05D007129 ORTHO05D008680 1.0e-19 100.5 68 70.6
TPR.G37473 Trifolium pratense HOM05D007129 ORTHO05D008680 1.0e-19 100.5 66 71.2
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 1.4e-19 100.1 68 70.6
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 2.3e-19 99.4 68 69.1
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.3e-19 99.4 69 66.7
MELO3C002241.2 Cucumis melo HOM05D007129 ORTHO05D008680 3.0e-19 99.0 68 69.1
Gorai.008G298100 Gossypium raimondii HOM05D007129 ORTHO05D008680 3.9e-19 98.6 68 72.1
Sp5g14130 Schrenkiella parvula HOM05D007129 ORTHO05D008680 3.9e-19 98.6 75 64.0
Aqoxy3G00879 Aquilegia oxysepala HOM05D007129 ORTHO05D008680 5.1e-19 98.2 67 71.6
Sed0013262 Sechium edule HOM05D007129 ORTHO05D008680 5.1e-19 98.2 68 69.1
Aqoxy3G00878 Aquilegia oxysepala HOM05D007129 ORTHO05D008680 6.7e-19 97.8 68 69.1
AL5G27120 Arabidopsis lyrata HOM05D007129 ORTHO05D008680 8.8e-19 97.4 69 68.1
MBI14_g22548_MAGBIO Magnolia biondii HOM05D007129 ORTHO05D008680 8.8e-19 97.4 70 67.1
ATR1149G142 Amborella trichopoda HOM05D007129 ORTHO05D008680 1.5e-18 96.7 68 64.7
CARHR156520 Cardamine hirsuta HOM05D007129 ORTHO05D008680 1.5e-18 96.7 69 65.2
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 2.5e-18 95.9 68 66.2
Thhalv10010580m.g Eutrema salsugineum HOM05D007129 ORTHO05D008680 2.5e-18 95.9 69 65.2
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 2.5e-18 95.9 69 65.2
AT3G47830 Arabidopsis thaliana HOM05D007129 ORTHO05D008680 3.3e-18 95.5 69 63.8
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 4.3e-18 95.1 69 65.2
PSO478G1802 Papaver somniferum HOM05D007129 ORTHO05D008680 4.3e-18 95.1 68 66.2
THA.LOC104821441 Tarenaya hassleriana HOM05D007129 ORTHO05D008680 4.3e-18 95.1 69 66.7
CDE04G2311 Ceratophyllum demersum HOM05D007129 ORTHO05D008680 7.4e-18 94.4 68 64.7
Sabra15G0076600 Salix brachista HOM05D007129 ORTHO05D008680 7.4e-18 94.4 60 75.0
Carub.0005s1394 Capsella rubella HOM05D007129 ORTHO05D008680 9.7e-18 94.0 69 66.7
Nitab4.5_0001286g0070 Nicotiana tabacum HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
Nitab4.5_0001642g0040 Nicotiana tabacum HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 1.7e-17 93.2 68 66.2
A01p25760 Brassica napus HOM05D007129 ORTHO05D008680 4.8e-17 91.7 69 62.3
BraA01t02492Z Brassica rapa HOM05D007129 ORTHO05D008680 4.8e-17 91.7 69 62.3
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 4.8e-17 91.7 68 64.7
BcaC09g49826 Brassica carinata HOM05D007129 ORTHO05D008680 6.3e-17 91.3 69 62.3
C01p32560 Brassica napus HOM05D007129 ORTHO05D008680 6.3e-17 91.3 69 62.3
BolC1t03194H Brassica oleracea HOM05D007129 ORTHO05D008680 1.1e-16 90.5 69 60.9
Nn4g22908 Nelumbo nucifera HOM05D007129 ORTHO05D008680 1.8e-16 89.7 68 61.8
PSO161G0060 Papaver somniferum HOM05D007129 ORTHO05D008680 4.1e-16 88.6 69 60.9
HPP92_010837 Vanilla planifolia HOM05D007129 ORTHO05D008680 2.0e-15 86.3 68 61.8
Zm00001eb279940 Zea mays HOM05D007129 ORTHO05D008680 2.0e-15 86.3 68 63.2
BcaNung06176 Brassica carinata HOM05D007129 ORTHO05D008680 4.5e-15 85.1 69 58.0
Pp3c2_36940 Physcomitrium patens HOM05D007129 ORTHO05D008680 5.0e-14 81.6 68 57.4
Mapoly0074s0054 Marchantia polymorpha HOM05D007129 ORTHO05D008680 2.5e-13 79.3 68 55.9
SEGI_05000 Sequoiadendron giganteum HOM05D007129 ORTHO05D008680 5.5e-13 78.2 68 55.9
Migut.D01796 Erythranthe guttata HOM05D007129 ORTHO05D008680 2.1e-12 76.3 58 62.1
GSVIVG01035300001 Vitis vinifera HOM05D000280 ORTHO05D008680 5.1e-11 71.6 54 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1694 Anthoceros agrestis HOM05D007129 ORTHO05D008680 8.8e-11 70.9 68 51.5
MCO09G188 Micromonas commoda HOM05D007129 ORTHO05D008680 1.1e-10 70.5 69 49.3
C03p72050 Brassica napus HOM05D007129 ORTHO05D008680 9.7e-10 67.4 63 52.4
BcaB05g23081 Brassica carinata HOM05D007129 ORTHO05D008680 2.9e-06 55.8 36 63.9


User provided reference genes

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