Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366601 Rosa chinensis HOM05D002366 ORTHO05D029503 1.4e-90 336.3 175 100.0
FvH4_7g22220 Fragaria vesca HOM05D035335 ORTHO05D029503 1.8e-40 169.9 170 59.4
FAN06G0829 Fragaria x ananassa HOM05D035335 ORTHO05D029503 1.8e-40 169.9 170 59.4
FAN01G2768 Fragaria x ananassa HOM05D035335 ORTHO05D029503 3.5e-28 129.0 171 50.9
Prupe.2G234100 Prunus persica HOM05D002366 ORTHO05D002499 6.6e-27 124.8 170 45.3
RcHm_v2.0_Chr1g0366621 Rosa chinensis HOM05D030075 ORTHO05D029402 9.2e-21 104.4 175 38.3
Prupe.2G234000 Prunus persica HOM05D002366 ORTHO05D002499 7.8e-20 101.3 165 37.6
MD01G1126800 Malus domestica HOM05D002366 ORTHO05D002499 1.7e-19 100.1 164 37.2
FvH4_7g22201 Fragaria vesca HOM05D002366 ORTHO05D002499 1.1e-18 97.4 169 36.7
FAN06G2917 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.1e-18 97.4 169 36.7
FvH4_7g22210 Fragaria vesca HOM05D002366 ORTHO05D002499 9.5e-18 94.4 166 36.1
FAN06G1604 Fragaria x ananassa HOM05D002366 ORTHO05D002499 9.5e-18 94.4 166 36.1
FAN03G0063 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.8e-17 92.8 165 34.5
FAN01G1305 Fragaria x ananassa HOM05D002366 ORTHO05D002499 6.2e-17 91.7 169 36.1
FAN01G1489 Fragaria x ananassa HOM05D002366 ORTHO05D002499 8.1e-17 91.3 244 30.7
FAN01G0260 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.1e-16 90.9 166 35.5
FAN06G2263 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.0e-15 86.7 163 35.0
RcHm_v2.0_Chr1g0366591 Rosa chinensis HOM05D002366 ORTHO05D002499 2.9e-14 82.8 165 34.5
CsaV3_5G026540 Cucumis sativus L. HOM05D002366 ORTHO05D002499 1.9e-13 80.1 161 36.6
MELO3C021645.2 Cucumis melo HOM05D002366 ORTHO05D002499 3.2e-13 79.3 161 36.0
Thecc.10G043700 Theobroma cacao HOM05D002366 ORTHO05D002499 3.2e-13 79.3 164 32.3
Thhalv10017310m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 4.1e-13 79.0 168 31.0
FAN06G4888 Fragaria x ananassa HOM05D002366 ORTHO05D002499 4.1e-13 79.0 144 36.1
BcaB02g09112 Brassica carinata HOM05D002366 ORTHO05D002499 7.1e-13 78.2 167 31.1
Thhalv10017305m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 9.2e-13 77.8 167 31.7
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 1.6e-12 77.0 160 33.8
Prupe.2G233800 Prunus persica HOM05D002366 ORTHO05D002499 1.6e-12 77.0 163 31.9
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 2.1e-12 76.6 167 32.3
FvH4_7g22230 Fragaria vesca HOM05D030075 ORTHO05D029402 2.1e-12 76.6 172 32.6
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 2.7e-12 76.3 163 32.5
RcHm_v2.0_Chr1g0366551 Rosa chinensis HOM05D002366 ORTHO05D002499 3.5e-12 75.9 168 34.5
MELO3C021643.2 Cucumis melo HOM05D002366 ORTHO05D002499 4.6e-12 75.5 159 34.0
Peaxi162Scf00760g00219 Petunia axillaris HOM05D002366 ORTHO05D002499 4.6e-12 75.5 159 34.6
Sp4g21820 Schrenkiella parvula HOM05D002366 ORTHO05D002499 4.6e-12 75.5 170 30.0
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 6.0e-12 75.1 160 32.5
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 6.0e-12 75.1 163 32.5
Prupe.2G233900 Prunus persica HOM05D002366 ORTHO05D002499 6.0e-12 75.1 166 33.1
BcaC02g12081 Brassica carinata HOM05D002366 ORTHO05D002499 7.8e-12 74.7 171 29.2
Prupe.2G233700 Prunus persica HOM05D002366 ORTHO05D002499 1.0e-11 74.3 162 32.7
Sp4g21830 Schrenkiella parvula HOM05D002366 ORTHO05D002499 1.0e-11 74.3 163 31.3
BolC4t28239H Brassica oleracea HOM05D002366 ORTHO05D002499 1.7e-11 73.6 165 31.5
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 1.7e-11 73.6 163 31.9
C04p67410 Brassica napus HOM05D002366 ORTHO05D002499 2.3e-11 73.2 165 31.5
Solyc04g011480.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 2.3e-11 73.2 159 32.1
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 2.3e-11 73.2 166 31.9
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 3.0e-11 72.8 167 27.5
C04p08120 Brassica napus HOM05D002366 ORTHO05D002499 3.0e-11 72.8 171 28.7
BolC4t22422H Brassica oleracea HOM05D002366 ORTHO05D002499 3.0e-11 72.8 171 28.7
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 3.0e-11 72.8 164 34.8
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 3.9e-11 72.4 165 30.3
Sopen04g005660 Solanum pennellii HOM05D002366 ORTHO05D002499 3.9e-11 72.4 159 31.4
Dinv26006 Davidia involucrata HOM05D002366 ORTHO05D002499 6.6e-11 71.6 166 31.3
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 6.6e-11 71.6 119 38.7
Eucgr.G02924 Eucalyptus grandis HOM05D002366 ORTHO05D002499 6.6e-11 71.6 163 30.7
Carub.0004s2160 Capsella rubella HOM05D002366 ORTHO05D002499 8.6e-11 71.2 165 29.1
PGSC0003DMG400027749 Solanum tuberosum HOM05D002366 ORTHO05D002499 8.6e-11 71.2 159 31.4
GSVIVG01016541001 Vitis vinifera HOM05D002366 ORTHO05D002499 8.6e-11 71.2 162 32.1
BcaC02g07395 Brassica carinata HOM05D002366 ORTHO05D002499 1.1e-10 70.9 166 30.7
FAN01G2158 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.1e-10 70.9 162 31.5
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 1.5e-10 70.5 165 30.3
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 1.5e-10 70.5 167 27.5
Dinv15677 Davidia involucrata HOM05D002366 ORTHO05D002499 1.5e-10 70.5 156 32.7
A04p30410 Brassica napus HOM05D002366 ORTHO05D002499 2.5e-10 69.7 159 30.8
AL4G36950 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 3.3e-10 69.3 167 29.3
Haze_17057 Corylus avellana HOM05D002366 ORTHO05D002499 3.3e-10 69.3 175 32.6
Peaxi162Scf00760g00218 Petunia axillaris HOM05D002366 ORTHO05D002499 3.3e-10 69.3 159 30.8
Aa31LG5G20080 Aethionema arabicum HOM05D002366 ORTHO05D002499 4.3e-10 68.9 165 29.7
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 4.3e-10 68.9 167 26.9
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 4.3e-10 68.9 166 30.7
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 4.3e-10 68.9 160 31.9
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 4.3e-10 68.9 160 31.2
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 5.6e-10 68.6 166 30.1
CAN.G786.13 Capsicum annuum HOM05D002366 ORTHO05D002499 5.6e-10 68.6 159 32.7
Cpa.g.sc361.1 Carica papaya HOM05D002366 ORTHO05D002499 5.6e-10 68.6 122 38.5
DCAR_027633 Daucus carota HOM05D002366 ORTHO05D002499 5.6e-10 68.6 161 31.1
Migut.I00570 Erythranthe guttata HOM05D002366 ORTHO05D002499 5.6e-10 68.6 155 32.3
FAN03G1080 Fragaria x ananassa HOM05D002366 ORTHO05D002499 5.6e-10 68.6 162 30.9
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 5.6e-10 68.6 162 30.2
A05p06860 Brassica napus HOM05D002366 ORTHO05D002499 1.2e-09 67.4 171 28.7
C04p67400 Brassica napus HOM05D002366 ORTHO05D002499 1.2e-09 67.4 159 30.2
FvH4_7g22200 Fragaria vesca HOM05D002366 ORTHO05D002499 1.2e-09 67.4 162 30.2
FAN06G1701 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.2e-09 67.4 162 30.2
BraA05t19651Z Brassica rapa HOM05D002366 ORTHO05D002499 1.6e-09 67.0 171 28.7
Potri.010G204700 Populus trichocarpa HOM05D002366 ORTHO05D002499 1.6e-09 67.0 164 32.9
A04p30420 Brassica napus HOM05D002366 ORTHO05D002499 3.6e-09 65.9 159 29.6
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 3.6e-09 65.9 164 31.1
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 6.2e-09 65.1 117 35.0
TWI74G0850 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 6.2e-09 65.1 179 29.1
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 8.1e-09 64.7 161 32.9
AT2G39530 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 1.1e-08 64.3 151 29.8
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 1.1e-08 64.3 117 34.2
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 1.1e-08 64.3 162 30.2
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.1e-08 64.3 162 29.0
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.1e-08 64.3 121 30.6
DCAR_019173 Daucus carota HOM05D002366 ORTHO05D002499 1.4e-08 63.9 116 34.5
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.4e-08 63.9 161 29.2
Sed0022735 Sechium edule HOM05D002366 ORTHO05D002499 1.4e-08 63.9 170 27.6
Sopen04g005670 Solanum pennellii HOM05D002366 ORTHO05D002499 1.8e-08 63.5 160 31.2
PGSC0003DMG400027748 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.8e-08 63.5 163 30.7
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 1.8e-08 63.5 117 34.2
Medtr7g024730 Medicago truncatula HOM05D002366 ORTHO05D002499 2.4e-08 63.2 119 34.5
Solyc11g006455.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 2.4e-08 63.2 162 30.2
Atru.chr11.990 Acer truncatum HOM05D002366 ORTHO05D002499 4.0e-08 62.4 178 32.6
Actinidia28014 Actinidia chinensis HOM05D002366 ORTHO05D002499 4.0e-08 62.4 162 28.4
Dinv20495 Davidia involucrata HOM05D002366 ORTHO05D002499 4.0e-08 62.4 197 26.4
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 4.0e-08 62.4 162 28.4
THA.LOC104824587 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 8.9e-08 61.2 108 35.2
Prupe.5G239200 Prunus persica HOM05D002366 ORTHO05D002499 1.2e-07 60.8 171 30.4
ClCG09G019910 Citrullus lanatus HOM05D002366 ORTHO05D002499 1.5e-07 60.5 173 32.9
Sed0020714 Sechium edule HOM05D002366 ORTHO05D002499 2.0e-07 60.1 163 30.7
Carub.0004s2161 Capsella rubella HOM05D002366 ORTHO05D002499 2.6e-07 59.7 120 33.3
DCAR_023535 Daucus carota HOM05D002366 ORTHO05D002499 2.6e-07 59.7 173 28.3
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 3.4e-07 59.3 155 29.0
Gohir.A03G090932 Gossypium hirsutum HOM05D002366 ORTHO05D002499 3.4e-07 59.3 173 29.5
Solyc04g011490.4 Solanum lycopersicum HOM05D002366 ORTHO05D002499 3.4e-07 59.3 163 30.7
TPR.G18306 Trifolium pratense HOM05D002366 ORTHO05D002499 3.4e-07 59.3 108 33.3
Migut.F01504 Erythranthe guttata HOM05D002366 ORTHO05D002499 5.8e-07 58.5 107 34.6
TPR.G28607 Trifolium pratense HOM05D002366 ORTHO05D002499 5.8e-07 58.5 166 28.9
ClCG09G019900 Citrullus lanatus HOM05D002366 ORTHO05D002499 7.6e-07 58.2 114 33.3
Dinv20547 Davidia involucrata HOM05D002366 ORTHO05D002499 7.6e-07 58.2 208 25.0
Medtr6g073040 Medicago truncatula HOM05D002366 ORTHO05D002499 7.6e-07 58.2 167 28.1
Medtr6g073090 Medicago truncatula HOM05D002366 ORTHO05D002499 7.6e-07 58.2 167 28.1
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 7.6e-07 58.2 160 28.8
Psat1g123560 Pisum sativum HOM05D002366 ORTHO05D002499 9.9e-07 57.8 167 29.9
CANSAT56G3459 Cannabis sativa HOM05D002366 ORTHO05D002499 1.3e-06 57.4 169 26.0
Dinv20493 Davidia involucrata HOM05D002366 ORTHO05D002499 1.3e-06 57.4 141 30.5
Dinv20549 Davidia involucrata HOM05D002366 ORTHO05D002499 1.3e-06 57.4 141 30.5
Manes.14G174100 Manihot esculenta HOM05D002366 ORTHO05D002499 1.3e-06 57.4 169 27.8
Atru.chr9.1589 Acer truncatum HOM05D002366 ORTHO05D002499 1.7e-06 57.0 181 28.7
MSTRG.8245 Avicennia marina HOM05D002366 ORTHO05D002499 2.2e-06 56.6 151 27.8
CsaV3_5G026560 Cucumis sativus L. HOM05D002366 ORTHO05D002499 2.2e-06 56.6 171 32.7
Gorai.005G134800 Gossypium raimondii HOM05D002366 ORTHO05D002499 2.2e-06 56.6 173 29.5
CANSAT56G4227 Cannabis sativa HOM05D002366 ORTHO05D002499 2.9e-06 56.2 175 25.1
Thecc.03G067200 Theobroma cacao HOM05D002366 ORTHO05D002499 2.9e-06 56.2 175 29.1
TWI81G0381 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 2.9e-06 56.2 169 27.2
CANSAT56G1523 Cannabis sativa HOM05D002366 ORTHO05D002499 3.8e-06 55.8 163 25.8
COL.COLO4_32729 Corchorus olitorius HOM05D002366 ORTHO05D002499 3.8e-06 55.8 167 33.5
PGSC0003DMG400037321 Solanum tuberosum HOM05D002366 ORTHO05D002499 3.8e-06 55.8 161 28.6
Migut.F01505 Erythranthe guttata HOM05D002366 ORTHO05D002499 4.9e-06 55.5 160 32.5
Lsat_1_v5_gn_8_34180 Lactuca sativa HOM05D002366 ORTHO05D002499 4.9e-06 55.5 174 27.0
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 4.9e-06 55.5 174 27.0
VMungo1383G2148 Vigna mungo HOM05D002366 ORTHO05D002499 4.9e-06 55.5 167 26.3
Cfa001486 Carpinus fangiana HOM05D002366 ORTHO05D002499 6.4e-06 55.1 164 30.5
FvH4_5g17870 Fragaria vesca HOM05D002366 ORTHO05D002499 6.4e-06 55.1 188 26.6
Solyc04g011467.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 6.4e-06 55.1 165 28.5
Sopen04g005650 Solanum pennellii HOM05D002366 ORTHO05D002499 8.4e-06 54.7 165 28.5
PGSC0003DMG400001986 Solanum tuberosum HOM05D002366 ORTHO05D002499 8.4e-06 54.7 104 37.5


User provided reference genes

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