Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 2.6e-25 117.9 57 100.0
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-12 74.3 40 90.0
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-12 74.3 40 90.0
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-12 74.3 40 90.0
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-12 74.3 40 90.0
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.7e-12 73.6 38 92.1
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.3e-11 72.4 38 89.5
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 1.4e-10 68.9 38 84.2
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 6.9e-10 66.6 42 73.8
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 9.1e-10 66.2 49 67.3
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 9.1e-10 66.2 57 63.2
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 1.2e-09 65.9 40 77.5
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 1.2e-09 65.9 38 81.6
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.0e-09 65.1 42 73.8
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.0e-09 65.1 42 73.8
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 2.6e-09 64.7 38 78.9
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 2.6e-09 64.7 38 78.9
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.6e-09 64.7 38 78.9
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 3.4e-09 64.3 36 80.6
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 5.9e-09 63.5 38 76.3
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 5.9e-09 63.5 39 74.4
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 5.9e-09 63.5 38 76.3
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 7.7e-09 63.2 46 63.0
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 7.7e-09 63.2 38 76.3
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 1.0e-08 62.8 38 76.3
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 1.0e-08 62.8 56 57.1
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 1.0e-08 62.8 38 76.3
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 1.0e-08 62.8 38 78.9
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.0e-08 62.8 38 76.3
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 1.3e-08 62.4 51 62.7
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 1.3e-08 62.4 35 82.9
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.3e-08 62.4 35 82.9
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.3e-08 62.4 35 82.9
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 1.3e-08 62.4 35 82.9
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 1.3e-08 62.4 38 78.9
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.3e-08 62.4 38 76.3
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 1.7e-08 62.0 41 70.7
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 1.7e-08 62.0 36 77.8
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 1.7e-08 62.0 38 73.7
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 2.2e-08 61.6 36 75.0
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 2.2e-08 61.6 36 75.0
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 2.2e-08 61.6 38 73.7
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 2.2e-08 61.6 40 70.0
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 2.9e-08 61.2 35 82.9
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 2.9e-08 61.2 38 73.7
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 3.8e-08 60.8 50 62.0
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 5.0e-08 60.5 38 73.7
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 5.0e-08 60.5 38 71.1
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 5.0e-08 60.5 38 73.7
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 6.5e-08 60.1 38 71.1
Glyma.15G057100 Glycine max HOM05D006953 ORTHO05D008556 6.5e-08 60.1 35 77.1
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 6.5e-08 60.1 38 73.7
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 6.5e-08 60.1 38 71.1
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 8.5e-08 59.7 38 71.1
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 1.1e-07 59.3 39 71.8
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 1.1e-07 59.3 38 71.1
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 1.1e-07 59.3 38 71.1
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 1.4e-07 58.9 35 77.1
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 1.9e-07 58.5 35 80.0
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 2.5e-07 58.2 45 62.2
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 2.5e-07 58.2 35 80.0
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.2e-07 57.8 35 74.3
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.2e-07 57.8 35 74.3
MD01G1125600 Malus domestica HOM05D006953 ORTHO05D008556 3.2e-07 57.8 38 71.1
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 3.2e-07 57.8 36 63.9
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 4.2e-07 57.4 35 77.1
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 4.2e-07 57.4 35 77.1
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 4.2e-07 57.4 35 77.1
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 4.2e-07 57.4 35 77.1
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 4.2e-07 57.4 35 74.3
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.2e-07 57.4 38 68.4
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 4.2e-07 57.4 38 68.4
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 4.2e-07 57.4 34 76.5
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 5.5e-07 57.0 35 74.3
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 5.5e-07 57.0 35 74.3
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 7.2e-07 56.6 47 55.3
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 7.2e-07 56.6 47 55.3
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 7.2e-07 56.6 47 55.3
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 7.2e-07 56.6 39 61.5
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 7.2e-07 56.6 38 68.4
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 9.4e-07 56.2 47 55.3
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 9.4e-07 56.2 39 61.5
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 9.4e-07 56.2 38 65.8
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 1.2e-06 55.8 47 55.3
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 1.2e-06 55.8 47 55.3
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.2e-06 55.8 35 71.4
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 1.6e-06 55.5 46 58.7
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 1.6e-06 55.5 39 64.1
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 2.1e-06 55.1 35 68.6
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 2.1e-06 55.1 35 68.6
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 2.1e-06 55.1 35 68.6
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 2.7e-06 54.7 35 71.4
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 4.7e-06 53.9 35 65.7
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 6.1e-06 53.5 35 65.7
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 6.1e-06 53.5 35 71.4
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 6.1e-06 53.5 35 65.7
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 6.1e-06 53.5 35 74.3
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 7.9e-06 53.1 35 62.9


User provided reference genes

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