Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364751 Rosa chinensis HOM05D000283 ORTHO05D004861 9.0e-22 105.9 50 100.0
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 4.2e-11 70.5 34 94.1
Potri.010G213950 Populus trichocarpa HOM05D000283 ORTHO05D004861 2.7e-10 67.8 92 43.5
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 1.4e-09 65.5 34 88.2
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 3.9e-09 63.9 34 85.3
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 6.7e-09 63.2 34 82.4
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 6.7e-09 63.2 34 82.4
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 6.7e-09 63.2 34 85.3
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 6.7e-09 63.2 34 88.2
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 6.7e-09 63.2 34 88.2
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 8.8e-09 62.8 34 88.2
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 8.8e-09 62.8 34 85.3
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 1.5e-08 62.0 34 82.4
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 1.5e-08 62.0 34 88.2
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 2.0e-08 61.6 34 85.3
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 2.0e-08 61.6 34 85.3
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 2.0e-08 61.6 34 79.4
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 2.6e-08 61.2 33 84.8
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.6e-08 61.2 34 85.3
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.6e-08 61.2 34 85.3
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 2.6e-08 61.2 34 85.3
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 2.6e-08 61.2 34 82.4
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 2.6e-08 61.2 34 85.3
CSS0006131 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 3.3e-08 60.8 34 82.4
CSS0019692 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 3.3e-08 60.8 34 82.4
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 3.3e-08 60.8 34 85.3
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 3.3e-08 60.8 34 82.4
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 5.7e-08 60.1 34 79.4
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 5.7e-08 60.1 34 79.4
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 5.7e-08 60.1 34 82.4
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 5.7e-08 60.1 34 82.4
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 7.4e-08 59.7 34 82.4
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 7.4e-08 59.7 34 82.4
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 7.4e-08 59.7 34 82.4
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 7.4e-08 59.7 34 82.4
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 79.4
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 85.3
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 85.3
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 85.3
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 85.3
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 85.3
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 79.4
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 82.4
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 82.4
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 9.7e-08 59.3 34 79.4
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 9.7e-08 59.3 33 78.8
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 1.3e-07 58.9 34 76.5
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 1.3e-07 58.9 34 79.4
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 1.3e-07 58.9 34 79.4
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 1.3e-07 58.9 34 82.4
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 1.7e-07 58.5 34 76.5
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 1.7e-07 58.5 34 82.4
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 2.2e-07 58.2 34 79.4
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 2.2e-07 58.2 34 79.4
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 82.4
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 82.4
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 79.4
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 79.4
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 79.4
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 76.5
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 79.4
THA.LOC104810168 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 2.8e-07 57.8 34 79.4
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 3.7e-07 57.4 34 79.4
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 3.7e-07 57.4 34 79.4
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 3.7e-07 57.4 34 79.4
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 4.8e-07 57.0 34 79.4
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 4.8e-07 57.0 34 73.5
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 4.8e-07 57.0 34 79.4
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 4.8e-07 57.0 34 79.4
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 4.8e-07 57.0 34 79.4
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 6.3e-07 56.6 34 73.5
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 6.3e-07 56.6 34 73.5
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 6.3e-07 56.6 34 73.5
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 6.3e-07 56.6 34 73.5
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 6.3e-07 56.6 34 70.6
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 8.2e-07 56.2 34 76.5
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 8.2e-07 56.2 34 76.5
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 8.2e-07 56.2 34 76.5
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 8.2e-07 56.2 34 76.5
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 1.1e-06 55.8 34 76.5
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 1.1e-06 55.8 34 79.4
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 1.1e-06 55.8 34 76.5
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 1.1e-06 55.8 34 76.5
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 1.4e-06 55.5 34 73.5
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 1.4e-06 55.5 34 73.5
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 1.4e-06 55.5 34 76.5
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 1.4e-06 55.5 34 76.5
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 1.8e-06 55.1 34 70.6
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 1.8e-06 55.1 34 73.5
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 2.4e-06 54.7 34 76.5
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 2.4e-06 54.7 34 76.5
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 2.4e-06 54.7 33 72.7
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 2.4e-06 54.7 34 67.6
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 3.1e-06 54.3 34 76.5
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 3.1e-06 54.3 34 76.5
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 3.1e-06 54.3 34 73.5
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 3.1e-06 54.3 34 70.6
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 4.1e-06 53.9 34 73.5
TPR.G40391 Trifolium pratense HOM05D000283 ORTHO05D004861 4.1e-06 53.9 34 70.6
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 5.3e-06 53.5 34 73.5
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 5.3e-06 53.5 34 73.5
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 5.3e-06 53.5 34 73.5
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 5.3e-06 53.5 34 73.5
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 5.3e-06 53.5 34 76.5
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 7.0e-06 53.1 34 73.5
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 7.0e-06 53.1 34 73.5
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 7.0e-06 53.1 34 76.5
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 7.0e-06 53.1 34 76.5


User provided reference genes

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