Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.9e-144 515.8 254 100.0
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 2.2e-132 475.7 254 92.1
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.2e-132 475.7 254 92.1
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.9e-132 474.6 254 91.7
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.4e-131 473.0 254 90.9
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.1e-131 470.7 254 90.6
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-129 466.1 254 90.9
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-129 466.1 254 90.9
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 3.3e-104 382.1 251 80.1
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.5e-101 373.2 251 78.5
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 3.9e-97 358.6 213 82.2
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 4.5e-93 345.1 258 68.6
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 7.7e-93 344.4 258 67.8
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 1.0e-92 344.0 258 67.4
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.3e-92 343.6 257 67.3
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.9e-91 339.7 250 68.8
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 1.6e-90 336.7 251 66.5
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 3.6e-90 335.5 263 65.0
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.0e-89 334.0 256 65.2
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 6.7e-89 331.3 263 63.9
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.5e-88 330.1 258 65.5
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 3.3e-88 328.9 255 66.3
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 9.7e-88 327.4 258 65.5
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 1.3e-87 327.0 252 66.7
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 1.3e-87 327.0 255 64.7
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 2.2e-87 326.2 261 64.4
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 3.7e-87 325.5 252 66.3
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.8e-87 325.1 256 65.6
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 6.3e-87 324.7 256 64.8
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.8e-86 323.2 256 64.5
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 5.3e-86 321.6 263 62.4
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 2.0e-85 319.7 252 65.5
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.0e-84 317.4 258 64.7
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 8.5e-84 314.3 258 64.0
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 2.1e-82 309.7 256 61.3
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 2.7e-82 309.3 257 60.7
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 1.8e-81 306.6 259 60.6
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 2.3e-81 306.2 259 60.2
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 4.0e-81 305.4 255 59.6
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 5.2e-81 305.1 259 60.2
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 1.5e-80 303.5 257 59.9
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 2.0e-80 303.1 254 61.0
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 2.0e-80 303.1 254 61.4
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 5.7e-80 301.6 260 59.6
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 9.7e-80 300.8 261 59.0
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 1.3e-79 300.4 252 63.1
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 3.7e-79 298.9 253 59.3
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 3.7e-79 298.9 252 59.9
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 1.1e-78 297.4 261 59.8
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.8e-78 296.6 248 60.9
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 2.4e-78 296.2 218 69.3
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 3.1e-78 295.8 253 60.1
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 3.1e-78 295.8 253 58.5
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.6e-77 293.5 252 59.5
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 2.7e-77 292.7 260 56.9
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.7e-77 292.7 263 60.1
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 2.7e-77 292.7 252 58.7
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.5e-77 292.4 258 58.9
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 4.5e-77 292.0 252 57.1
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 1.7e-76 290.0 257 56.4
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 2.2e-76 289.7 228 63.2
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 2.2e-76 289.7 249 58.2
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 5.0e-76 288.5 262 58.4
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 6.5e-76 288.1 260 56.2
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 6.5e-76 288.1 250 58.4
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 1.5e-75 287.0 260 56.2
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.5e-75 287.0 261 56.7
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 1.9e-75 286.6 239 58.6
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 3.2e-75 285.8 271 56.1
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 3.2e-75 285.8 261 55.9
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 1.6e-74 283.5 257 56.4
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 2.7e-74 282.7 260 55.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 3.6e-74 282.3 263 56.3
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 6.1e-74 281.6 266 57.5
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 1.4e-73 280.4 259 55.6
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.8e-73 280.0 257 56.8
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 6.8e-73 278.1 259 55.6
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 1.2e-72 277.3 254 56.7
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 1.2e-72 277.3 254 56.7
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 1.2e-72 277.3 254 56.7
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.5e-72 276.9 254 56.7
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 3.4e-72 275.8 251 56.2
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 2.2e-71 273.1 235 62.1
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 3.7e-71 272.3 263 53.2
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 4.8e-71 271.9 258 55.0
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.2e-69 267.3 259 53.7
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 2.0e-69 266.5 227 59.9
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 4.7e-66 255.4 225 59.1
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 8.0e-66 254.6 311 47.6
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 1.0e-65 254.2 229 59.4
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 7.5e-64 248.1 239 55.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.4e-62 243.8 249 51.8
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 9.2e-62 241.1 189 69.8
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.6e-61 240.4 219 55.3
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 3.5e-61 239.2 266 48.9
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.2e-58 230.7 261 48.7
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 6.1e-58 228.4 164 71.3
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 6.1e-58 228.4 253 49.4
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.8e-57 226.9 249 50.2
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 5.2e-57 225.3 164 67.1
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 5.9e-53 211.8 251 47.8
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 5.2e-49 198.7 153 62.7
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 2.4e-46 189.9 157 58.6
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-44 184.5 157 54.1
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-44 184.5 157 54.1
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-44 184.5 157 54.1
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 1.3e-39 167.5 153 52.9
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 6.4e-39 165.2 252 38.9
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 6.6e-36 155.2 117 61.5
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 6.6e-36 155.2 124 57.3
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.5e-35 154.1 148 52.7
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 7.3e-35 151.8 261 35.2
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 3.1e-33 146.4 231 37.2
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 2.9e-31 139.8 212 39.6
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 1.9e-30 137.1 109 62.4
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.2e-29 134.4 161 49.1
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 4.9e-23 112.5 160 45.6
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 4.6e-21 105.9 90 58.9
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 3.9e-20 102.8 96 52.1
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 1.3e-18 97.8 90 55.6
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 1.6e-18 97.4 94 51.1
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 5.3e-17 92.4 78 64.1
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.3e-15 87.8 76 60.5
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 1.1e-14 84.7 184 32.1
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.4e-14 83.6 76 59.2
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 4.2e-14 82.8 48 83.3
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 1.8e-12 77.4 77 51.9
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 3.9e-12 76.3 67 55.2
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 6.7e-12 75.5 55 78.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 4.3e-11 72.8 97 43.3
Oeu008279.1 Olea europaea HOM05D005673 ORTHO05D007081 2.4e-06 57.0 41 53.7


User provided reference genes

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