Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 5.6e-47 190.7 100 100.0
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 7.6e-28 127.1 72 93.1
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 6.4e-27 124.0 72 90.3
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.4e-27 124.0 72 90.3
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 4.2e-26 121.3 72 87.5
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 7.1e-26 120.6 72 86.1
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.2e-25 119.8 72 86.1
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 3.5e-25 118.2 73 83.6
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 4.6e-25 117.9 73 82.2
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.0e-25 117.5 73 83.6
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.0e-25 117.5 73 83.6
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 6.0e-25 117.5 73 83.6
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.0e-24 116.7 74 81.1
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.3e-24 116.3 72 84.7
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.3e-24 116.3 73 82.2
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 1.7e-24 115.9 72 83.3
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 1.7e-24 115.9 72 83.3
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.7e-24 115.9 72 83.3
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 1.7e-24 115.9 72 83.3
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 2.3e-24 115.5 72 81.9
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 2.3e-24 115.5 72 81.9
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 3.0e-24 115.2 73 82.2
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 3.0e-24 115.2 72 80.6
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 3.0e-24 115.2 72 81.9
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 3.9e-24 114.8 72 81.9
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.9e-24 114.8 72 83.3
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 3.9e-24 114.8 73 82.2
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 5.1e-24 114.4 73 82.2
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 6.6e-24 114.0 72 81.9
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 6.6e-24 114.0 72 81.9
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 6.6e-24 114.0 73 79.5
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 6.6e-24 114.0 72 81.9
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 6.6e-24 114.0 74 78.4
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 8.7e-24 113.6 73 79.5
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 8.7e-24 113.6 73 79.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 8.7e-24 113.6 72 81.9
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 8.7e-24 113.6 72 81.9
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 8.7e-24 113.6 72 81.9
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 8.7e-24 113.6 74 78.4
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 8.7e-24 113.6 72 81.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.1e-23 113.2 72 80.6
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.1e-23 113.2 72 80.6
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.1e-23 113.2 75 73.3
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.1e-23 113.2 72 80.6
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.1e-23 113.2 69 85.5
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.5e-23 112.8 73 79.5
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 76.4
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 81.9
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.5e-23 112.8 73 80.8
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 80.6
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.5e-23 112.8 72 79.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 76.7
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.9e-23 112.5 72 80.6
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.9e-23 112.5 72 80.6
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.9e-23 112.5 72 80.6
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 78.1
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 75.3
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 79.5
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.9e-23 112.5 72 80.6
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 78.1
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.9e-23 112.5 73 80.8
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 2.5e-23 112.1 73 79.5
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 3.3e-23 111.7 72 80.6
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 3.3e-23 111.7 73 76.7
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 3.3e-23 111.7 73 75.3
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 3.3e-23 111.7 73 79.5
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 3.3e-23 111.7 73 78.1
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 4.3e-23 111.3 73 78.1
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 5.6e-23 110.9 69 81.2
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 5.6e-23 110.9 73 78.1
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 5.6e-23 110.9 73 78.1
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.6e-23 110.9 73 78.1
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 5.6e-23 110.9 74 75.7
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 7.3e-23 110.5 72 79.2
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 7.3e-23 110.5 74 75.7
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 7.3e-23 110.5 74 73.0
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 7.3e-23 110.5 73 78.1
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 7.3e-23 110.5 69 82.6
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 7.3e-23 110.5 73 75.3
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 9.6e-23 110.2 69 84.1
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 9.6e-23 110.2 69 79.7
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 9.6e-23 110.2 72 79.2
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 9.6e-23 110.2 73 76.7
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 9.6e-23 110.2 72 77.8
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 9.6e-23 110.2 73 75.3
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 9.6e-23 110.2 69 81.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 9.6e-23 110.2 72 77.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 9.6e-23 110.2 72 77.8
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.3e-22 109.8 69 81.2
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.6e-22 109.4 72 76.4
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.6e-22 109.4 69 79.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.6e-22 109.4 73 78.1
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.6e-22 109.4 69 81.2
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.8e-22 108.6 75 72.0
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.8e-22 108.6 74 71.6
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.8e-22 108.6 70 74.3
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.6e-22 108.2 72 75.0
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 3.6e-22 108.2 72 73.6
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 3.6e-22 108.2 69 79.7
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 3.6e-22 108.2 73 71.2
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.6e-22 108.2 72 79.2
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.6e-22 108.2 72 76.4
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 3.6e-22 108.2 73 75.3
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 3.6e-22 108.2 73 75.3
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.8e-22 107.8 72 77.8
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 6.2e-22 107.5 69 76.8
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 8.1e-22 107.1 73 74.0
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 8.1e-22 107.1 72 72.2
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 8.1e-22 107.1 70 78.6
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 8.1e-22 107.1 71 74.6
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 8.1e-22 107.1 68 80.9
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.1e-21 106.7 72 73.6
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.1e-21 106.7 69 79.7
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.8e-21 105.9 73 71.2
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.4e-21 105.5 73 71.2
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 2.4e-21 105.5 69 76.8
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 3.1e-21 105.1 72 73.6
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 5.3e-21 104.4 91 65.9
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.9e-21 104.0 114 57.9
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.0e-21 103.6 72 70.8
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.0e-21 103.6 72 70.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.0e-21 103.6 114 57.0
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.0e-21 103.6 114 57.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 1.5e-20 102.8 95 63.2
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.0e-20 102.4 72 68.1
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.0e-20 102.4 72 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.6e-20 102.1 69 73.9
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.6e-20 102.1 72 68.1
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.6e-20 102.1 114 56.1
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.4e-20 101.7 73 69.9
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 7.6e-20 100.5 72 70.8
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 9.9e-20 100.1 73 65.8
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-19 99.8 72 69.4
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.7e-19 99.4 73 68.5
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.7e-19 99.4 72 65.3
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.2e-19 99.0 72 66.7
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 2.2e-19 99.0 57 91.2
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.2e-19 99.0 70 71.4
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 3.8e-19 98.2 69 69.6
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 3.8e-19 98.2 72 69.4
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 3.8e-19 98.2 72 68.1
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 3.8e-19 98.2 72 66.7
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 3.8e-19 98.2 72 68.1
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 3.8e-19 98.2 72 65.3
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 8.4e-19 97.1 69 68.1
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.2e-18 94.7 69 69.6
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.2e-18 94.7 69 63.8
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 9.3e-18 93.6 72 62.5
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.2e-17 93.2 72 65.3
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.2e-17 93.2 90 61.1
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.3e-16 89.7 59 76.3
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 5.1e-16 87.8 62 80.6
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 5.1e-16 87.8 62 80.6
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.1e-15 86.7 94 47.9
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.5e-15 86.3 58 77.6
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 3.3e-15 85.1 64 64.1
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.6e-12 75.5 92 43.5
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 1.7e-11 72.8 68 63.2
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.8e-11 71.6 72 58.3


User provided reference genes

Program Settings