Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 4.2e-300 1033.9 510 100.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 3.7e-288 994.2 511 96.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.3e-288 993.0 509 96.3
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-287 992.6 511 96.3
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-287 992.6 511 96.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-287 991.9 511 96.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.3e-274 948.3 507 91.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-268 928.7 509 91.2
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.3e-264 916.0 508 89.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-249 865.9 507 85.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.6e-249 863.6 515 83.9
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.4e-247 859.4 514 84.0
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.6e-246 855.9 501 84.8
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.0e-245 853.2 508 83.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 8.6e-245 850.1 503 83.1
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 7.3e-244 847.0 508 83.9
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.6e-243 844.7 501 83.8
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.4e-242 842.0 511 82.6
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 4.0e-242 841.3 504 83.1
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 6.9e-242 840.5 508 82.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.9e-240 835.1 514 80.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.9e-240 835.1 509 80.9
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 6.4e-240 833.9 508 81.7
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.9e-239 832.4 501 82.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.2e-239 831.2 504 81.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 7.1e-239 830.5 514 80.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.2e-238 829.7 507 81.3
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.7e-238 828.6 513 82.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.0e-237 826.6 517 79.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-236 822.4 515 80.4
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.5e-236 822.0 528 79.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.5e-236 822.0 503 82.1
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-235 819.7 500 80.6
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.1e-235 818.9 531 79.1
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 3.1e-234 815.1 480 84.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.4e-233 811.6 517 79.1
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.2e-232 808.9 512 79.5
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.9e-232 808.5 508 79.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 4.2e-231 804.7 481 83.2
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 7.1e-231 803.9 508 78.5
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 7.9e-230 800.4 511 78.5
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 6.7e-229 797.3 510 79.2
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.5e-228 796.2 513 79.1
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.5e-228 796.2 511 79.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.9e-228 795.8 495 81.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.5e-228 795.4 504 79.2
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.5e-228 795.4 498 80.5
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 5.6e-228 794.3 513 77.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 7.4e-228 793.9 512 77.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 9.6e-228 793.5 515 77.7
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 9.6e-228 793.5 513 77.8
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.1e-227 792.3 513 77.8
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.8e-227 792.0 413 95.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 4.8e-227 791.2 523 77.2
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-225 786.2 510 77.5
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.5e-225 786.2 503 78.7
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.9e-223 779.2 511 76.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.5e-223 777.7 500 76.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.1e-223 777.3 512 77.3
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 7.1e-223 777.3 526 74.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.5e-222 775.0 466 83.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 4.6e-222 774.6 493 80.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 7.9e-222 773.9 545 73.0
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 3.0e-221 771.9 510 77.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.0e-221 771.9 522 76.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 5.1e-221 771.2 455 84.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 9.6e-220 766.9 515 75.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.6e-219 766.1 513 77.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-218 763.5 500 75.6
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.4e-218 762.3 503 76.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 4.0e-218 761.5 503 75.1
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.9e-218 760.8 546 72.2
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.4e-217 758.4 514 74.9
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 4.5e-217 758.1 591 68.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.9e-216 755.4 502 74.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.3e-215 750.4 511 74.8
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.6e-214 749.6 502 74.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-213 745.3 509 74.3
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-213 745.3 509 74.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.3e-212 741.5 511 73.8
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 9.6e-212 740.3 501 73.5
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 9.6e-212 740.3 501 74.5
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.2e-209 733.4 495 76.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 2.0e-209 732.6 531 71.2
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.0e-208 730.3 478 76.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.9e-208 728.8 431 84.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 3.3e-204 715.3 495 72.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 6.3e-203 711.1 508 72.0
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.3e-202 708.0 515 70.7
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-201 706.8 509 70.5
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.4e-201 705.3 504 70.6
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.0e-200 701.4 516 69.4
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 8.5e-200 700.7 465 76.3
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.4e-199 697.2 465 75.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 6.7e-197 691.0 503 71.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.3e-184 650.2 528 65.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.9e-184 649.0 472 72.0
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.2e-183 645.6 526 65.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.7e-181 637.9 430 74.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.4e-173 613.6 493 63.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.0e-172 609.8 540 58.3
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 4.8e-171 605.1 376 80.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.8e-170 603.2 492 64.0
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.7e-168 596.7 482 64.3
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.0e-168 595.1 486 64.4
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 2.5e-167 592.8 439 70.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-163 580.5 365 82.2
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 6.3e-163 578.2 341 83.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.5e-161 572.0 502 60.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.5e-159 566.2 363 80.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.2e-156 557.4 365 78.4
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.7e-155 552.4 360 80.0
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.6e-153 547.0 485 58.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.7e-153 546.2 392 73.0
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.8e-153 544.7 473 60.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 4.0e-149 532.3 292 87.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.2e-148 530.8 521 54.7
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.2e-148 530.8 488 56.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.4e-140 502.3 494 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 9.2e-138 494.6 507 51.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.2e-132 477.6 337 76.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.4e-130 470.7 425 61.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.9e-130 470.3 357 70.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.1e-117 427.9 535 45.0
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.3e-111 406.4 316 69.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.2e-110 402.1 468 52.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.0e-104 383.3 365 60.3
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.2e-94 348.6 168 97.6
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-89 334.3 232 72.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.9e-87 327.4 291 62.2
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-82 311.2 315 56.2
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.5e-82 309.3 224 68.8
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.8e-80 302.0 246 63.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-72 278.1 145 89.0
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.3e-72 277.3 397 41.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 5.9e-68 262.7 147 84.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.1e-65 254.2 147 83.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.4e-63 246.5 311 43.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-58 231.9 205 64.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.6e-55 220.7 327 41.9
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.0e-48 197.2 164 62.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.4e-40 171.8 100 79.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.8e-40 171.4 192 52.6
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.8e-39 165.6 100 77.0
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.4e-31 140.2 198 46.5
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.4e-29 135.2 334 29.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.5e-28 130.6 68 86.8
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.2e-20 105.5 78 64.1
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 5.2e-16 90.1 65 69.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.9e-14 84.3 72 62.5
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.4e-13 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-11 75.5 38 89.5
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-09 68.9 64 57.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.6e-09 68.6 44 65.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.2e-09 66.6 58 51.7


User provided reference genes

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