Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.4e-241 838.6 462 100.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 5.9e-200 701.0 466 84.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-198 695.7 466 83.5
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.6e-197 691.8 458 84.5
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-192 675.6 458 83.2
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.7e-189 664.8 458 84.1
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.8e-131 471.9 469 62.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.4e-116 424.1 469 58.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 5.3e-108 395.6 435 57.7
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.9e-105 387.1 465 52.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.7e-104 383.3 467 51.4
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 8.7e-103 378.3 432 54.4
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 5.3e-100 369.0 466 50.9
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 6.9e-100 368.6 476 49.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.9e-99 365.5 466 50.6
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 7.6e-99 365.2 467 49.5
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 2.1e-96 357.1 475 48.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-94 350.9 470 48.9
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-94 350.5 208 89.9
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.2e-93 347.1 432 50.5
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.8e-92 344.0 468 47.6
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.6e-91 340.1 468 47.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.9e-90 336.7 466 48.7
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 3.8e-90 336.3 467 48.2
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.6e-86 323.6 480 44.8
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.1e-84 318.2 476 45.4
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.5e-83 314.3 463 45.6
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.4e-81 305.1 431 45.9
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.3e-79 300.4 473 43.8
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 3.0e-79 300.1 476 43.1
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.1e-78 298.1 463 44.3
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.0e-78 297.4 405 48.4
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.6e-78 297.0 477 42.3
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.1e-76 291.6 467 45.2
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.6e-75 287.0 472 43.4
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 5.9e-75 285.8 467 43.3
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 2.2e-74 283.9 469 44.1
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.8e-74 283.1 438 44.1
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 5.0e-74 282.7 474 40.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.5e-73 280.4 397 46.6
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 3.2e-73 280.0 473 44.6
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.0e-71 275.0 268 59.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 6.7e-71 272.3 467 42.2
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.1e-68 265.0 487 39.8
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.8e-68 264.2 480 41.0
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.4e-68 263.8 477 40.0
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 3.1e-68 263.5 464 44.2
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 4.1e-68 263.1 470 42.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.1e-68 263.1 471 42.7
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.2e-67 261.5 259 60.6
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.6e-67 261.2 469 39.7
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 7.7e-67 258.8 467 42.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.3e-66 258.1 436 41.5
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.7e-66 257.7 253 58.9
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 5.0e-66 256.1 446 41.7
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.2e-65 253.1 473 41.4
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.6e-64 250.0 317 51.4
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.4e-63 248.1 467 39.2
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 1.8e-63 247.7 466 38.2
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.8e-63 247.7 523 37.7
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 5.7e-62 242.7 517 37.3
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 7.5e-62 242.3 438 39.0
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 4.8e-61 239.6 517 36.9
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.3e-61 239.2 478 39.7
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.1e-60 238.4 461 39.7
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-60 238.4 463 38.0
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.8e-60 237.7 451 39.2
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.6e-59 234.6 398 41.7
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.6e-59 234.6 444 38.7
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 4.5e-59 233.0 487 37.6
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.0e-58 231.9 437 39.4
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.9e-58 230.3 445 39.8
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 6.5e-58 229.2 473 37.6
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 8.6e-58 228.8 485 37.3
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 8.6e-58 228.8 234 57.7
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.5e-57 228.0 432 39.4
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.5e-57 228.0 406 41.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.9e-57 227.6 438 39.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.6e-56 224.6 467 38.3
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.8e-56 223.8 258 52.3
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 4.0e-55 219.9 255 52.9
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.6e-54 217.2 237 57.8
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.6e-54 217.2 455 38.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 5.7e-54 216.1 469 36.2
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.7e-54 216.1 473 36.6
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.7e-53 214.5 220 58.2
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.7e-53 213.4 260 48.1
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 4.9e-53 213.0 467 37.5
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.1e-52 211.8 458 36.7
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.4e-52 210.7 424 35.6
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-50 205.3 458 36.0
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 5.0e-50 203.0 471 35.7
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 5.6e-49 199.5 461 35.1
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.8e-48 197.2 476 33.0
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.3e-47 194.1 475 36.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.5e-46 191.4 431 33.6
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 4.4e-46 189.9 266 50.0
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 2.2e-45 187.6 261 49.0
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.8e-44 184.5 374 37.2
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.4e-44 184.1 274 45.3
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.5e-43 180.3 221 53.8
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.5e-41 174.9 470 31.7
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 4.3e-41 173.3 458 32.3
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.1e-39 168.7 477 33.1
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.4e-38 163.7 196 54.1
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 6.0e-35 152.9 221 47.1
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.9e-34 150.2 311 35.4
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 4.3e-33 146.7 288 37.5
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.7e-29 134.8 288 36.5
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.9e-29 134.0 359 33.4
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-28 132.1 72 95.8
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-28 132.1 115 62.6
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.1e-27 127.9 142 59.2
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.0e-26 124.0 287 31.7
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.1e-25 122.1 274 36.9
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.6e-24 117.1 112 50.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 2.4e-23 114.4 141 49.6
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.8e-22 109.8 252 35.7
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.2e-20 104.0 465 28.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-18 98.6 134 47.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.5e-17 94.4 85 67.1
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.6e-16 90.5 114 48.2
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 8.1e-16 89.4 107 43.9
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.1e-16 89.4 74 58.1
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.4e-15 87.8 68 60.3
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 3.8e-13 80.5 167 32.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.4e-13 79.7 71 57.7
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.4e-12 78.6 105 54.3
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 1.6e-11 75.1 75 58.7
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.6e-11 73.6 156 35.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.3e-10 71.2 157 36.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 3.0e-10 70.9 74 52.7
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 4.8e-08 63.5 69 42.0
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.4e-07 61.2 89 38.2
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 4.5e-06 57.0 65 58.5
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 7.6e-06 56.2 97 41.2


User provided reference genes

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