Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0353761 Rosa chinensis HOM05D002404 ORTHO05D011417 4.2e-130 468.0 231 100.0
Prupe.2G163400 Prunus persica HOM05D017224 ORTHO05D011417 3.9e-19 99.4 166 38.0
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 7.9e-12 75.1 186 33.3
Cc01_g13700 Coffea canephora HOM05D002404 ORTHO05D003647 2.3e-11 73.6 163 32.5
Prupe.2G163100 Prunus persica HOM05D017224 ORTHO05D011417 2.3e-11 73.6 161 32.3
Cfa003957 Carpinus fangiana HOM05D029117 ORTHO05D011417 8.7e-11 71.6 167 32.9
Potri.009G040900 Populus trichocarpa HOM05D002404 ORTHO05D003647 8.7e-11 71.6 163 31.9
Sabra16G0150400 Salix brachista HOM05D002404 ORTHO05D003647 1.1e-10 71.2 163 31.9
Potri.001G247700 Populus trichocarpa HOM05D002404 ORTHO05D003647 1.9e-10 70.5 163 31.9
HPP92_018042 Vanilla planifolia HOM05D002404 ORTHO05D003647 1.9e-10 70.5 163 31.9
Cc02_g07010 Coffea canephora HOM05D002404 ORTHO05D003647 2.5e-10 70.1 163 31.9
PSO384G1519 Papaver somniferum HOM05D002404 ORTHO05D003647 2.5e-10 70.1 163 32.5
PSO585G0022 Papaver somniferum HOM05D002404 ORTHO05D003647 2.5e-10 70.1 163 32.5
EL10Ac7g16103 Beta vulgaris HOM05D002404 ORTHO05D003647 3.3e-10 69.7 178 32.0
CDE09G0989 Ceratophyllum demersum HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 31.9
CsaV3_5G008820 Cucumis sativus L. HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 30.7
MBI18_g09770_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 31.3
Nn2g11338 Nelumbo nucifera HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 31.3
Oeu032673.1 Olea europaea HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 30.7
Prupe.2G163000 Prunus persica HOM05D017224 ORTHO05D011417 3.3e-10 69.7 167 32.3
Rhsim01G0234300 Rhododendron simsii HOM05D002404 ORTHO05D003647 3.3e-10 69.7 163 31.9
Eucgr.J01951 Eucalyptus grandis HOM05D002404 ORTHO05D003647 4.3e-10 69.3 163 31.9
Sed0001054 Sechium edule HOM05D002404 ORTHO05D003647 5.7e-10 68.9 163 31.3
SMO172G0020 Selaginella moellendorffii HOM05D002404 ORTHO05D003647 5.7e-10 68.9 163 31.3
Hund18869 Selenicereus undatus HOM05D002404 ORTHO05D003647 5.7e-10 68.9 163 32.5
SEGI_27416 Sequoiadendron giganteum HOM05D002404 ORTHO05D003647 5.7e-10 68.9 163 31.3
Ah.08g220430 Amaranthus hybridus HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.3
CANSAT54G2750 Cannabis sativa HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.9
CANSAT78G2202 Cannabis sativa HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.9
CANSAT78G2483 Cannabis sativa HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.9
Cpa.g.sc112.81 Carica papaya HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.3
Haze_15476 Corylus avellana HOM05D029117 ORTHO05D011417 7.4e-10 68.6 182 30.8
Haze_15477 Corylus avellana HOM05D029117 ORTHO05D011417 7.4e-10 68.6 182 30.8
Sabra09G0028700 Salix brachista HOM05D002404 ORTHO05D003647 7.4e-10 68.6 169 32.5
SEGI_13348 Sequoiadendron giganteum HOM05D002404 ORTHO05D003647 7.4e-10 68.6 163 31.3
Actinidia34442 Actinidia chinensis HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 30.7
arahy.Tifrunner.gnm1.ann1.L4PA5N Arachis hypogaea HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 30.7
arahy.Tifrunner.gnm1.ann1.U7GG8I Arachis hypogaea HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 30.7
CiPaw.13G083600 Carya illinoinensis HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 31.3
Gorai.003G125300 Gossypium raimondii HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 31.3
MBI14_g32930_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 31.3
Rhsim01G0234200 Rhododendron simsii HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 30.7
unitig_0.g1546 Utricularia gibba HOM05D002404 ORTHO05D003647 9.7e-10 68.2 163 30.7
Atru.chr3.4053 Acer truncatum HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
arahy.Tifrunner.gnm1.ann1.PUR3G8 Arachis hypogaea HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
MSTRG.18604 Avicennia marina HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
MSTRG.21172 Avicennia marina HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
Dinv14480 Davidia involucrata HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
Duzib170G0557 Durio zibethinus HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
FvH4_4g13930 Fragaria vesca HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.9
Glyma.18G067800 Glycine max HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
Oeu035018.1 Olea europaea HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
Peaxi162Scf01058g00150 Petunia axillaris HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.9
PGR102G0182 Punica granatum HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
PGR119G1764 Punica granatum HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
QL01p029015 Quercus lobata HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
Sed0018009 Sechium edule HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
TAR636G2785 Trochodendron aralioides HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 31.3
unitig_747.g22020 Utricularia gibba HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
vmacro14574 Vaccinium macrocarpon HOM05D002404 ORTHO05D003647 1.3e-09 67.8 163 30.7
Ah.14g082670 Amaranthus hybridus HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Aqoxy1G00741 Aquilegia oxysepala HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 30.7
CSS0001422 Camellia sinensis var. sinensis HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
CSS0025335 Camellia sinensis var. sinensis HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
CiPaw.14G062600 Carya illinoinensis HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
MELO3C025879.2 Cucumis melo HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
CsaV3_6G016510 Cucumis sativus L. HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Migut.D02143 Erythranthe guttata HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 30.7
HanXRQChr08g0222181 Helianthus annuus HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Hma1.2p1_0710F.1_g207410 Hydrangea macrophylla HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Lj2A1074T37 Lonicera japonica HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Lalb_Chr18g0050611 Lupinus albus HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 30.7
MD03G1078300 Malus domestica HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 30.7
Prupe.6G063300 Prunus persica HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
RcHm_v2.0_Chr5g0067981 Rosa chinensis HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Hund04899 Selenicereus undatus HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.9
Solyc06g076660.3 Solanum lycopersicum HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
Sopen06g033050 Solanum pennellii HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
PGSC0003DMG400030432 Solanum tuberosum HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
SGA_v2.0_scaffold77G25326 Striga asiatica HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
SGA_v2.0_scaffold95G28680 Striga asiatica HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 31.3
vmacro07002 Vaccinium macrocarpon HOM05D002404 ORTHO05D003647 1.6e-09 67.4 163 30.7
ATR0680G321 Amborella trichopoda HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.1
arahy.Tifrunner.gnm1.ann1.6QL4ST Arachis hypogaea HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
CAN.G394.99 Capsicum annuum HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
AUR62001707 Chenopodium quinoa HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
AUR62020074 Chenopodium quinoa HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
Ca_14888_v3 Cicer arietinum L. HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
ClCG02G019790 Citrullus lanatus HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
COL.COLO4_19083 Corchorus olitorius HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
Haze_24235 Corylus avellana HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
DCAR_007406 Daucus carota HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
ECA248G2035 Erigeron canadensis HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
Gohir.A03G048100 Gossypium hirsutum HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
Gohir.D03G118900 Gossypium hirsutum HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
HanXRQChr05g0135561 Helianthus annuus HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
MD11G1083000 Malus domestica HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
MD13G1227300 Malus domestica HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
Nitab4.5_0000744g0120 Nicotiana tabacum HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
Rhsim03G0139300 Rhododendron simsii HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
Thecc.09G307900 Theobroma cacao HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 31.3
TWI31G0565 Tripterygium wilfordii HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
TAR633G0461 Trochodendron aralioides HOM05D002404 ORTHO05D003647 2.2e-09 67.0 163 30.7
Actinidia29670 Actinidia chinensis HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 29.4
Cfa011630 Carpinus fangiana HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
FvH4_6g24870 Fragaria vesca HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
FAN05G4258 Fragaria x ananassa HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Glyma.08G334900 Glycine max HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
HanXRQChr01g0011001 Helianthus annuus HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Lsat_1_v5_gn_5_171040 Lactuca sativa HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Lsat_1_v5_gn_8_12580 Lactuca sativa HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Manes.01G165500 Manihot esculenta HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Mapoly0075s0032 Marchantia polymorpha HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 31.3
Nitab4.5_0011134g0030 Nicotiana tabacum HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Os02g0805200 Oryza sativa ssp. japonica HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
Pp3c12_18160 Physcomitrium patens HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 31.3
Psat5g162720 Pisum sativum HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
SHI38242 Sapria himalayana HOM05D002404 ORTHO05D003647 2.8e-09 66.6 165 31.5
Sc12g0001020 Simmondsia chinensis HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 30.7
THA.LOC104826301 Tarenaya hassleriana HOM05D002404 ORTHO05D003647 2.8e-09 66.6 163 31.3
Actinidia33951 Actinidia chinensis HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 29.4
CSS0029507 Camellia sinensis var. sinensis HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
FvH4_3g37710 Fragaria vesca HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
FAN11G3986 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
FAN16G1397 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
FAN21G0265 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
FAN25G0398 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
Gohir.A13G225400 Gossypium hirsutum HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.1
Gohir.D13G230500 Gossypium hirsutum HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.1
Gorai.013G261100 Gossypium raimondii HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.1
Lj6g0014589 Lotus japonicus HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
Lalb_Chr15g0082601 Lupinus albus HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
Manes.02G123000 Manihot esculenta HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
THA.LOC104815801 Tarenaya hassleriana HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 31.3
TWI75G1109 Tripterygium wilfordii HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
VMungo0540G1433 Vigna mungo HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
Zm00001eb258230 Zea mays HOM05D002404 ORTHO05D003647 3.7e-09 66.2 163 30.7
Medtr3g462130 Medicago truncatula HOM05D002404 ORTHO05D003647 4.8e-09 65.9 163 30.1
Oeu049279.1 Olea europaea HOM05D002404 ORTHO05D003647 4.8e-09 65.9 163 30.7
TPR.G30115 Trifolium pratense HOM05D002404 ORTHO05D003647 4.8e-09 65.9 163 30.7
AL1G17520 Arabidopsis lyrata HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
AT1G07370 Arabidopsis thaliana HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
BcaC07g42007 Brassica carinata HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
C08p50640 Brassica napus HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
BolC8t52592H Brassica oleracea HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
BraA09t41985Z Brassica rapa HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
CARHR007080 Cardamine hirsuta HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
ClCG07G003870 Citrullus lanatus HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 29.4
Thhalv10008509m.g Eutrema salsugineum HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
Phvul.006G137800 Phaseolus vulgaris HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
Sp1g06120 Schrenkiella parvula HOM05D002404 ORTHO05D003647 6.3e-09 65.5 163 30.7
BcaC07g42462 Brassica carinata HOM05D002404 ORTHO05D003647 8.2e-09 65.1 163 30.7
Ciclev10029070m.g Citrus clementina HOM05D002404 ORTHO05D003647 8.2e-09 65.1 163 30.1
SalBow3G1232 Salvia bowleyana HOM05D002404 ORTHO05D003647 8.2e-09 65.1 163 30.1
SalBow3G1958 Salvia bowleyana HOM05D002404 ORTHO05D003647 8.2e-09 65.1 163 30.1
Aa31LG5G6890 Aethionema arabicum HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
AagrBONN_evm.TU.Sc2ySwM_368.185 Anthoceros agrestis HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.1
AL4G24290 Arabidopsis lyrata HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
AT2G29570 Arabidopsis thaliana HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
BcaB02g10263 Brassica carinata HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
Carub.0004s1063 Capsella rubella HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
CARHR122910 Cardamine hirsuta HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
Cc01_g09170 Coffea canephora HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 31.3
ECA233G2070 Erigeron canadensis HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.1
Thhalv10017099m.g Eutrema salsugineum HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
FAN14G3520 Fragaria x ananassa HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.1
Sp4g12300 Schrenkiella parvula HOM05D002404 ORTHO05D003647 1.1e-08 64.7 163 30.7
A05p15830 Brassica napus HOM05D002404 ORTHO05D003647 1.4e-08 64.3 163 30.7
C04p21270 Brassica napus HOM05D002404 ORTHO05D003647 1.4e-08 64.3 163 30.7
BolC4t23656H Brassica oleracea HOM05D002404 ORTHO05D003647 1.4e-08 64.3 163 30.7
BraA05t20496Z Brassica rapa HOM05D002404 ORTHO05D003647 1.4e-08 64.3 163 30.7
DCAR_011777 Daucus carota HOM05D002404 ORTHO05D003647 1.8e-08 63.9 163 30.7
Dinv34434 Davidia involucrata HOM05D002404 ORTHO05D003647 1.8e-08 63.9 163 30.7
Zm00001eb192050 Zea mays HOM05D002404 ORTHO05D003647 2.4e-08 63.5 163 30.1
Lsat_1_v5_gn_8_72200 Lactuca sativa HOM05D002404 ORTHO05D003647 5.3e-08 62.4 163 30.1
FAN12G0397 Fragaria x ananassa HOM05D002404 ORTHO05D003647 1.2e-07 61.2 112 34.8
MCO09G325 Micromonas commoda HOM05D002404 ORTHO05D003647 1.2e-07 61.2 165 28.5
PRCOL_00005339 Prasinoderma coloniale HOM05D002404 ORTHO05D003647 1.2e-07 61.2 165 27.9
GSVIVG01024815001 Vitis vinifera HOM05D002404 ORTHO05D003647 3.4e-07 59.7 112 33.0
MELO3C025142.2 Cucumis melo HOM05D002404 ORTHO05D003647 5.9e-07 58.9 163 30.1
MBI05_g36637_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D003647 5.9e-07 58.9 112 33.0
HanXRQChr12g0369341 Helianthus annuus HOM05D002404 ORTHO05D003647 1.0e-06 58.2 163 28.8
Pp3c4_11630 Physcomitrium patens HOM05D002404 ORTHO05D003647 1.3e-06 57.8 112 33.0
TAR374G0750 Trochodendron aralioides HOM05D002404 ORTHO05D414369 1.7e-06 57.4 172 30.8
Prupe.2G163300 Prunus persica HOM05D017224 ORTHO05D011417 2.2e-06 57.0 167 28.1


User provided reference genes

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