Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 2.8e-202 708.4 352 100.0
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.3e-179 631.7 338 93.8
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 4.8e-178 627.9 338 92.9
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 4.8e-178 627.9 338 92.9
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 4.8e-178 627.9 338 92.9
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.0e-177 624.0 338 92.6
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 4.0e-172 608.2 338 91.1
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 8.8e-172 607.1 338 90.2
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.8e-170 602.1 338 90.2
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 4.8e-170 601.3 338 89.6
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 3.1e-169 598.6 337 88.7
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 3.1e-169 598.6 334 89.5
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 4.1e-169 598.2 338 89.1
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 9.1e-169 597.0 338 89.3
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 1.2e-168 596.7 338 88.8
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 2.0e-168 595.9 334 88.9
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 4.5e-168 594.7 339 89.1
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.0e-167 593.6 338 88.2
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.0e-167 593.6 337 88.7
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.0e-167 593.6 338 87.0
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 1.0e-167 593.6 341 87.4
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.3e-167 593.2 338 87.9
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.3e-167 593.2 338 87.9
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.7e-167 592.8 338 88.2
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.7e-167 592.8 335 88.4
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.9e-167 592.0 338 86.7
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.9e-167 592.0 338 88.8
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 3.8e-167 591.7 338 87.9
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 3.8e-167 591.7 335 89.0
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 3.8e-167 591.7 337 87.8
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 3.8e-167 591.7 338 87.0
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 3.8e-167 591.7 338 86.4
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 5.0e-167 591.3 338 87.0
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 6.5e-167 590.9 338 88.2
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 8.5e-167 590.5 338 87.9
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 8.5e-167 590.5 338 87.6
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 8.5e-167 590.5 339 87.9
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 8.5e-167 590.5 335 88.7
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 8.5e-167 590.5 339 87.9
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.1e-166 590.1 339 87.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.1e-166 590.1 338 87.0
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 1.1e-166 590.1 338 87.3
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 1.9e-166 589.3 341 87.4
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.9e-166 589.3 338 87.0
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.9e-166 589.3 338 86.1
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.5e-166 589.0 339 87.6
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 2.5e-166 589.0 339 88.2
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.2e-166 588.6 333 89.2
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 5.5e-166 587.8 338 86.1
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 7.2e-166 587.4 340 87.1
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 7.2e-166 587.4 333 88.9
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 9.4e-166 587.0 338 87.3
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 9.4e-166 587.0 338 85.8
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 1.2e-165 586.6 337 87.5
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.6e-165 586.3 335 87.2
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 2.1e-165 585.9 338 86.4
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 2.7e-165 585.5 338 87.0
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 3.6e-165 585.1 338 85.5
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 3.6e-165 585.1 338 87.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 4.7e-165 584.7 336 86.9
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.8e-164 582.8 332 88.6
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.8e-164 582.8 338 85.8
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.8e-164 582.8 338 86.4
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.0e-164 582.0 336 86.6
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 5.2e-164 581.3 332 88.0
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 5.2e-164 581.3 335 86.6
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.0e-163 579.3 338 84.6
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 3.4e-163 578.6 338 85.5
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 3.4e-163 578.6 338 85.8
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 4.4e-163 578.2 328 88.1
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 4.4e-163 578.2 338 85.2
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.4e-163 578.2 338 86.1
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 4.4e-163 578.2 338 85.8
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 5.7e-163 577.8 338 85.2
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 5.7e-163 577.8 338 85.2
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 5.7e-163 577.8 338 85.2
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 7.5e-163 577.4 332 86.4
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 7.5e-163 577.4 328 86.9
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.3e-162 576.6 335 87.8
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.3e-162 576.6 361 80.9
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.2e-162 575.9 338 85.5
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 3.7e-162 575.1 337 85.5
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 3.1e-161 572.0 338 84.9
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 4.1e-161 571.6 328 86.3
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 7.0e-161 570.9 338 84.3
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 7.0e-161 570.9 375 78.4
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 9.1e-161 570.5 338 83.7
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.2e-160 570.1 335 86.3
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 2.7e-160 568.9 338 84.0
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 2.7e-160 568.9 334 84.4
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.8e-159 565.1 310 90.6
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 5.0e-159 564.7 334 84.7
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 5.0e-159 564.7 338 83.7
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 4.2e-158 561.6 328 84.5
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 5.5e-158 561.2 338 83.7
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 7.2e-158 560.8 338 84.0
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 2.7e-157 558.9 338 83.7
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 6.1e-157 557.8 367 78.5
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 3.0e-156 555.4 341 83.0
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.0e-156 555.1 335 81.5
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.5e-155 553.1 328 84.1
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 4.4e-155 551.6 338 79.9
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 8.3e-154 547.4 394 73.6
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.1e-153 547.0 341 80.1
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 5.4e-153 544.7 341 81.8
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 1.3e-151 540.0 310 84.8
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 2.1e-149 532.7 338 77.8
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 8.9e-148 527.3 338 77.5
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 3.4e-147 525.4 338 75.7
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 1.8e-145 519.6 338 76.0
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 3.2e-145 518.8 338 75.7
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.3e-143 513.5 313 79.9
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 3.3e-142 508.8 342 74.9
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 4.3e-142 508.4 338 78.4
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 5.4e-137 491.5 319 74.6
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 8.6e-135 484.2 332 71.7
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.9e-129 466.5 324 70.7
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 3.1e-124 449.1 313 69.3
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.1e-120 436.4 332 68.7
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 5.6e-118 428.3 338 69.2
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.8e-116 423.3 251 85.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.8e-116 423.3 252 84.1
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 2.9e-114 416.0 238 85.7
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 6.4e-114 414.8 249 82.3
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 3.0e-111 406.0 245 83.7
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 3.6e-109 399.1 327 65.1
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 1.4e-108 397.1 219 90.9
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.9e-102 376.7 207 90.3
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 1.3e-101 374.0 231 81.0
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 8.1e-101 371.3 217 84.3
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 8.7e-95 351.3 192 90.6
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 3.3e-94 349.4 325 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 1.2e-88 330.9 208 78.4
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 5.7e-86 322.0 188 86.2
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.7e-82 310.5 315 54.3
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 4.6e-80 302.4 241 64.3
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.4e-75 286.2 171 83.6
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.7e-74 283.9 194 68.6
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 6.5e-66 255.4 145 89.7
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 7.9e-64 248.4 134 91.8
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 3.5e-51 206.5 148 70.3
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 7.7e-51 205.3 154 64.9
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.1e-44 184.9 147 67.3
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 6.8e-39 165.6 86 91.9
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 8.6e-34 148.7 96 77.1
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 5.6e-33 146.0 100 76.0
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.1e-32 144.1 102 71.6
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.8e-31 141.0 95 74.7
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.0e-31 140.2 101 69.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 7.5e-30 135.6 86 76.7
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 8.3e-29 132.1 78 79.5
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 2.0e-22 110.9 127 51.2
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 1.7e-21 107.8 123 56.1
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.9e-20 104.4 126 50.8
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 4.6e-19 99.8 324 27.8
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 5.0e-18 96.3 291 27.8
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.6e-18 95.9 208 31.7
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.1e-16 90.9 108 50.0
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 3.6e-16 90.1 281 29.2
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 6.2e-16 89.4 73 61.6
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 6.8e-15 85.9 77 59.7
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 5.8e-14 82.8 268 29.5
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.7e-11 73.9 103 46.6
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 1.7e-10 71.2 210 28.1
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 3.9e-10 70.1 52 71.2
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 9.5e-09 65.5 45 73.3
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 6.2e-08 62.8 42 71.4


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