Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0348991 Rosa chinensis HOM05D004506 ORTHO05D030863 6.9e-40 166.8 80 100.0
RcHm_v2.0_Chr1g0348931 Rosa chinensis HOM05D004506 ORTHO05D005894 3.9e-27 124.4 64 92.2
FAN06G3057 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.0e-26 122.1 64 90.6
FAN06G3781 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.0e-26 122.1 64 90.6
FAN10G0788 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.0e-26 122.1 64 90.6
FAN10G1665 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.0e-26 122.1 64 90.6
FAN01G3128 Fragaria x ananassa HOM05D004506 ORTHO05D005894 3.3e-26 121.3 64 90.6
FAN03G0108 Fragaria x ananassa HOM05D004506 ORTHO05D005894 3.3e-26 121.3 64 90.6
MD15G1302100 Malus domestica HOM05D004506 ORTHO05D005894 1.4e-24 115.9 64 84.4
Prupe.2G274800 Prunus persica HOM05D004506 ORTHO05D005894 2.0e-23 112.1 65 86.2
CiPaw.03G093800 Carya illinoinensis HOM05D004506 ORTHO05D005894 7.9e-20 100.1 64 71.9
Dinv16855 Davidia involucrata HOM05D004506 ORTHO05D005894 1.4e-19 99.4 64 68.8
Medtr3g008020 Medicago truncatula HOM05D004506 ORTHO05D005894 1.8e-19 99.0 64 70.3
TPR.G12273 Trifolium pratense HOM05D004506 ORTHO05D005894 1.8e-19 99.0 64 70.3
Lj3g0001820 Lotus japonicus HOM05D004506 ORTHO05D005894 2.3e-19 98.6 64 70.3
QL09p019769 Quercus lobata HOM05D004506 ORTHO05D005894 5.1e-19 97.4 63 68.3
Lj4g0017120 Lotus japonicus HOM05D004506 ORTHO05D005894 1.1e-18 96.3 64 68.8
Phvul.005G010500 Phaseolus vulgaris HOM05D004506 ORTHO05D005894 1.5e-18 95.9 64 68.8
Rhsim03G0164500 Rhododendron simsii HOM05D004506 ORTHO05D005894 4.4e-18 94.4 64 64.1
ClCG01G001110 Citrullus lanatus HOM05D004506 ORTHO05D005894 7.4e-18 93.6 64 67.2
Glyma.04G130900 Glycine max HOM05D004506 ORTHO05D005894 7.4e-18 93.6 64 67.2
Glyma.06G316900 Glycine max HOM05D004506 ORTHO05D005894 7.4e-18 93.6 64 67.2
Sed0002724 Sechium edule HOM05D004506 ORTHO05D005894 9.7e-18 93.2 64 65.6
TWI77G0110 Tripterygium wilfordii HOM05D004506 ORTHO05D005894 9.7e-18 93.2 60 70.0
Psat5g229120 Pisum sativum HOM05D004506 ORTHO05D005894 1.7e-17 92.4 64 65.6
Eucgr.K00176 Eucalyptus grandis HOM05D004506 ORTHO05D005894 2.2e-17 92.0 64 67.2
Actinidia13592 Actinidia chinensis HOM05D004506 ORTHO05D005894 2.8e-17 91.7 64 65.6
arahy.Tifrunner.gnm1.ann1.95MHTD Arachis hypogaea HOM05D004506 ORTHO05D005894 3.7e-17 91.3 64 65.6
arahy.Tifrunner.gnm1.ann1.IFX0ZR Arachis hypogaea HOM05D004506 ORTHO05D005894 3.7e-17 91.3 64 65.6
Atru.chr1.848 Acer truncatum HOM05D004506 ORTHO05D005894 8.2e-17 90.1 64 65.6
vmacro06819 Vaccinium macrocarpon HOM05D004506 ORTHO05D005894 8.2e-17 90.1 64 64.1
Cfa008176 Carpinus fangiana HOM05D004506 ORTHO05D005894 1.1e-16 89.7 64 65.6
Potri.001G126700 Populus trichocarpa HOM05D004506 ORTHO05D005894 1.1e-16 89.7 64 65.6
Ciclev10004861m.g Citrus clementina HOM05D004506 ORTHO05D005894 1.4e-16 89.4 64 64.1
GSVIVG01017497001 Vitis vinifera HOM05D004506 ORTHO05D005894 3.1e-16 88.2 64 59.4
Duzib084G1159 Durio zibethinus HOM05D004506 ORTHO05D005894 4.1e-16 87.8 64 60.9
MELO3C005823.2 Cucumis melo HOM05D004506 ORTHO05D005894 5.3e-16 87.4 65 64.6
Manes.06G102500 Manihot esculenta HOM05D004506 ORTHO05D005894 5.3e-16 87.4 60 70.0
SGA_v2.0_scaffold2G01228 Striga asiatica HOM05D004506 ORTHO05D005894 7.0e-16 87.0 60 63.3
CsaV3_5G001240 Cucumis sativus L. HOM05D004506 ORTHO05D005894 9.1e-16 86.7 65 64.6
Lalb_Chr15g0079621 Lupinus albus HOM05D004506 ORTHO05D005894 9.1e-16 86.7 65 66.2
Psat4g224080 Pisum sativum HOM05D004506 ORTHO05D005894 1.2e-15 86.3 62 61.3
AUR62012431 Chenopodium quinoa HOM05D004506 ORTHO05D005894 1.6e-15 85.9 60 65.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.6e-15 85.9 62 62.9
Peaxi162Scf00271g00832 Petunia axillaris HOM05D004506 ORTHO05D005894 2.6e-15 85.1 60 65.0
EL10Ac2g04175 Beta vulgaris HOM05D004506 ORTHO05D005894 3.5e-15 84.7 60 63.3
Migut.F00501 Erythranthe guttata HOM05D004506 ORTHO05D005894 3.5e-15 84.7 60 63.3
HanXRQChr15g0485901 Helianthus annuus HOM05D004506 ORTHO05D005894 3.5e-15 84.7 60 63.3
Lsat_1_v5_gn_5_9361 Lactuca sativa HOM05D004506 ORTHO05D005894 3.5e-15 84.7 60 63.3
Cc02_g04480 Coffea canephora HOM05D004506 ORTHO05D005894 4.5e-15 84.3 64 59.4
ECA232G0243 Erigeron canadensis HOM05D004506 ORTHO05D005894 4.5e-15 84.3 60 63.3
Lj3g0005902 Lotus japonicus HOM05D004506 ORTHO05D005894 5.9e-15 84.0 65 61.5
EL10Ac7g17596 Beta vulgaris HOM05D004506 ORTHO05D005894 7.7e-15 83.6 60 61.7
AUR62031554 Chenopodium quinoa HOM05D004506 ORTHO05D005894 7.7e-15 83.6 60 61.7
Nitab4.5_0000262g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 1.0e-14 83.2 60 65.0
Nitab4.5_0000448g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 1.0e-14 83.2 60 65.0
Rhsim03G0164600 Rhododendron simsii HOM05D004506 ORTHO05D005894 1.3e-14 82.8 69 53.6
Nitab4.5_0001267g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 1.7e-14 82.4 60 65.0
Prupe.5G016200 Prunus persica HOM05D004506 ORTHO05D005894 1.7e-14 82.4 48 77.1
Hund25864 Selenicereus undatus HOM05D004506 ORTHO05D005894 1.7e-14 82.4 64 59.4
CAN.G330.6 Capsicum annuum HOM05D004506 ORTHO05D005894 2.9e-14 81.6 60 63.3
COL.COLO4_14080 Corchorus olitorius HOM05D004506 ORTHO05D005894 3.8e-14 81.3 64 56.2
Oeu042536.1 Olea europaea HOM05D004506 ORTHO05D005894 5.0e-14 80.9 48 72.9
QL09p019805 Quercus lobata HOM05D004506 ORTHO05D005894 6.5e-14 80.5 63 55.6
CSS0039072 Camellia sinensis var. sinensis HOM05D004506 ORTHO05D005894 4.2e-13 77.8 64 60.9
DCAR_020180 Daucus carota HOM05D004506 ORTHO05D005894 4.2e-13 77.8 58 56.9
PSO170G4268 Papaver somniferum HOM05D004506 ORTHO05D005894 4.2e-13 77.8 54 66.7
Ah.16g104730 Amaranthus hybridus HOM05D004506 ORTHO05D005894 5.5e-13 77.4 60 58.3
Solyc06g034150.4 Solanum lycopersicum HOM05D004506 ORTHO05D005894 5.5e-13 77.4 51 64.7
Sopen06g010810 Solanum pennellii HOM05D004506 ORTHO05D005894 5.5e-13 77.4 51 64.7
BcaC06g32172 Brassica carinata HOM05D004506 ORTHO05D005894 7.2e-13 77.0 52 65.4
A10p31480 Brassica napus HOM05D004506 ORTHO05D005894 7.2e-13 77.0 52 65.4
C09p72170 Brassica napus HOM05D004506 ORTHO05D005894 7.2e-13 77.0 52 65.4
BolC9t59961H Brassica oleracea HOM05D004506 ORTHO05D005894 7.2e-13 77.0 52 65.4
BraA10t45194Z Brassica rapa HOM05D004506 ORTHO05D005894 7.2e-13 77.0 52 65.4
PSO017G3180 Papaver somniferum HOM05D004506 ORTHO05D005894 7.2e-13 77.0 54 64.8
Peaxi162Scf00304g01360 Petunia axillaris HOM05D004506 ORTHO05D005894 9.4e-13 76.6 51 66.7
Thecc.03G152000 Theobroma cacao HOM05D004506 ORTHO05D005894 9.4e-13 76.6 64 57.8
Gohir.D03G106400 Gossypium hirsutum HOM05D004506 ORTHO05D005894 1.2e-12 76.3 53 62.3
Gorai.003G112900 Gossypium raimondii HOM05D004506 ORTHO05D005894 1.2e-12 76.3 53 62.3
QL09p019790 Quercus lobata HOM05D004506 ORTHO05D005894 1.2e-12 76.3 63 54.0
Sc09g0010310 Simmondsia chinensis HOM05D004506 ORTHO05D005894 1.2e-12 76.3 64 54.7
AT5G04620 Arabidopsis thaliana HOM05D004506 ORTHO05D005894 1.6e-12 75.9 55 60.0
COL.COLO4_14084 Corchorus olitorius HOM05D004506 ORTHO05D005894 2.1e-12 75.5 64 56.2
Nn6g33875 Nelumbo nucifera HOM05D004506 ORTHO05D005894 2.1e-12 75.5 52 63.5
Gohir.A03G059500 Gossypium hirsutum HOM05D004506 ORTHO05D005894 2.7e-12 75.1 53 60.4
CDE11G0103 Ceratophyllum demersum HOM05D004506 ORTHO05D005894 3.6e-12 74.7 64 53.1
CARHR208670 Cardamine hirsuta HOM05D004506 ORTHO05D005894 4.7e-12 74.3 55 60.0
Sp6g38160 Schrenkiella parvula HOM05D004506 ORTHO05D005894 6.1e-12 73.9 50 64.0
Carub.0006s0354 Capsella rubella HOM05D004506 ORTHO05D005894 8.0e-12 73.6 49 65.3
AL6G14250 Arabidopsis lyrata HOM05D004506 ORTHO05D005894 1.0e-11 73.2 49 65.3
Thhalv10013434m.g Eutrema salsugineum HOM05D004506 ORTHO05D005894 1.0e-11 73.2 49 65.3
MBI04_g09533_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 1.0e-11 73.2 52 59.6
MBI04_g34093_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 1.0e-11 73.2 52 59.6
Lj4g0011722 Lotus japonicus HOM05D004506 ORTHO05D005894 1.4e-11 72.8 49 65.3
Aa31LG11G5470 Aethionema arabicum HOM05D004506 ORTHO05D005894 2.3e-11 72.0 55 58.2
Migut.F00496 Erythranthe guttata HOM05D004506 ORTHO05D005894 2.3e-11 72.0 59 57.6
Cpa.g.sc13.277 Carica papaya HOM05D004506 ORTHO05D005894 3.0e-11 71.6 60 55.0
unitig_748.g7052 Utricularia gibba HOM05D004506 ORTHO05D005894 1.1e-10 69.7 47 68.1
ATR0057G043 Amborella trichopoda HOM05D004506 ORTHO05D005894 1.3e-09 66.2 45 66.7
HPP92_025562 Vanilla planifolia HOM05D004506 ORTHO05D005894 3.7e-09 64.7 45 62.2
COL.COLO4_14083 Corchorus olitorius HOM05D004506 ORTHO05D005894 6.3e-09 63.9 68 45.6
Zm00001eb434390 Zea mays HOM05D004506 ORTHO05D005894 1.1e-08 63.2 44 63.6
Os10g0560900 Oryza sativa ssp. japonica HOM05D004506 ORTHO05D005894 1.4e-08 62.8 40 70.0
Duzib205G1320 Durio zibethinus HOM05D004506 ORTHO05D005894 3.1e-08 61.6 66 54.5
SEGI_23386 Sequoiadendron giganteum HOM05D004506 ORTHO05D005894 9.1e-08 60.1 44 59.1
Dinv02187 Davidia involucrata HOM05D000222 ORTHO05D000329 4.5e-07 57.8 43 60.5
Sabra01G0097800 Salix brachista HOM05D004506 ORTHO05D030863 1.3e-06 56.2 43 62.8
AagrBONN_evm.TU.Sc2ySwM_117.115 Anthoceros agrestis HOM05D004506 ORTHO05D005894 1.7e-06 55.8 43 55.8
MCO13G220 Micromonas commoda HOM05D004506 ORTHO05D005894 1.7e-06 55.8 43 58.1
Pp3c12_22290 Physcomitrium patens HOM05D004506 ORTHO05D005894 2.2e-06 55.5 45 57.8
Actinidia24984 Actinidia chinensis HOM05D004506 ORTHO05D030863 2.9e-06 55.1 45 53.3


User provided reference genes

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