Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 1.0e-35 152.9 78 100.0
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 6.5e-27 123.6 67 92.5
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.4e-24 115.9 67 86.6
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.4e-24 115.9 67 86.6
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.4e-24 115.9 67 86.6
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.4e-24 115.9 67 86.6
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 5.2e-24 114.0 67 85.1
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 1.2e-20 102.8 67 74.6
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 1.0e-19 99.8 67 73.1
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.3e-19 99.4 67 73.1
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 2.3e-19 98.6 67 76.1
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.9e-19 98.2 67 70.1
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 3.8e-19 97.8 67 74.6
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 8.6e-19 96.7 67 71.6
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 8.6e-19 96.7 67 74.6
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 8.6e-19 96.7 67 74.6
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 1.1e-18 96.3 67 71.6
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 1.5e-18 95.9 67 70.1
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 73.1
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 73.1
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 73.1
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 73.1
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 73.1
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 68.7
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 1.9e-18 95.5 67 76.1
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 2.5e-18 95.1 67 73.1
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.5e-18 95.1 67 71.6
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 3.3e-18 94.7 67 70.1
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 4.2e-18 94.4 67 73.1
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 5.5e-18 94.0 66 72.7
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 5.5e-18 94.0 66 72.7
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 5.5e-18 94.0 66 72.7
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 5.5e-18 94.0 67 71.6
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 5.5e-18 94.0 66 72.7
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 5.5e-18 94.0 67 68.7
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 5.5e-18 94.0 67 70.1
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 7.2e-18 93.6 67 70.1
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 7.2e-18 93.6 67 70.1
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 9.5e-18 93.2 67 70.1
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 9.5e-18 93.2 67 74.6
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 9.5e-18 93.2 67 74.6
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.2e-17 92.8 67 70.1
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.2e-17 92.8 67 71.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.2e-17 92.8 67 74.6
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 1.6e-17 92.4 67 68.7
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 1.6e-17 92.4 67 68.7
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.1e-17 92.0 67 65.7
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 2.1e-17 92.0 67 68.7
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.1e-17 92.0 67 70.1
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 2.1e-17 92.0 67 73.1
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.8e-17 91.7 66 71.2
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.8e-17 91.7 66 71.2
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 2.8e-17 91.7 67 65.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 2.8e-17 91.7 67 64.2
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 2.8e-17 91.7 67 73.1
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 2.8e-17 91.7 67 67.2
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 3.6e-17 91.3 67 68.7
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 3.6e-17 91.3 67 67.2
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.6e-17 91.3 67 68.7
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 3.6e-17 91.3 67 71.6
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 3.6e-17 91.3 67 70.1
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 4.7e-17 90.9 67 70.1
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 4.7e-17 90.9 67 67.2
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 4.7e-17 90.9 67 70.1
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 4.7e-17 90.9 67 68.7
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 6.1e-17 90.5 65 70.8
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 6.1e-17 90.5 67 71.6
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 6.1e-17 90.5 67 71.6
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 8.0e-17 90.1 67 68.7
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.0e-16 89.7 68 70.6
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 1.0e-16 89.7 67 70.1
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.0e-16 89.7 67 67.2
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 1.8e-16 89.0 67 65.7
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 1.8e-16 89.0 67 65.7
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.3e-16 88.6 68 72.1
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 3.0e-16 88.2 67 67.2
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 3.0e-16 88.2 67 68.7
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.0e-16 88.2 67 68.7
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 3.0e-16 88.2 67 65.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 4.0e-16 87.8 68 67.6
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 4.0e-16 87.8 67 68.7
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.0e-16 87.8 67 65.7
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.0e-16 87.8 67 65.7
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 4.0e-16 87.8 67 65.7
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 4.0e-16 87.8 67 68.7
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 4.0e-16 87.8 68 70.6
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 5.2e-16 87.4 67 67.2
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 5.2e-16 87.4 67 67.2
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.2e-16 87.4 67 67.2
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 5.2e-16 87.4 67 68.7
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 6.8e-16 87.0 67 65.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 6.8e-16 87.0 66 65.2
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 6.8e-16 87.0 67 65.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 6.8e-16 87.0 67 62.7
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 8.9e-16 86.7 68 67.6
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 8.9e-16 86.7 68 69.1
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 8.9e-16 86.7 67 64.2
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 8.9e-16 86.7 67 68.7
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.2e-15 86.3 67 64.2
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 1.5e-15 85.9 67 61.2
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 1.5e-15 85.9 67 62.7
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 2.0e-15 85.5 68 64.7
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 2.0e-15 85.5 67 65.7
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 2.0e-15 85.5 67 64.2
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.0e-15 85.5 67 64.2
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.0e-15 85.5 60 71.7
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 2.6e-15 85.1 67 65.7
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 2.6e-15 85.1 67 65.7
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 2.6e-15 85.1 67 64.2
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 3.4e-15 84.7 67 64.2
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 4.4e-15 84.3 67 64.2
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 4.4e-15 84.3 67 68.7
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 4.4e-15 84.3 67 68.7
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 5.7e-15 84.0 67 64.2
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 5.7e-15 84.0 67 62.7
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 7.5e-15 83.6 67 64.2
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 7.5e-15 83.6 67 64.2
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 7.5e-15 83.6 67 64.2
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 7.5e-15 83.6 67 65.7
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 9.8e-15 83.2 66 65.2
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 1.3e-14 82.8 67 65.7
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.7e-14 82.4 67 62.7
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.7e-14 82.4 68 66.2
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.2e-14 82.0 67 58.2
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 2.9e-14 81.6 67 62.7
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.9e-14 81.6 67 62.7
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 4.9e-14 80.9 67 58.2
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 6.3e-14 80.5 67 62.7
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 6.3e-14 80.5 67 64.2
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 8.3e-14 80.1 67 62.7
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 8.3e-14 80.1 67 61.2
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 8.3e-14 80.1 67 64.2
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 2.4e-13 78.6 62 62.9
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.4e-13 78.6 61 65.6
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 2.4e-13 78.6 67 55.2
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.4e-13 78.6 67 59.7
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 5.4e-13 77.4 68 58.8
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 9.2e-13 76.6 67 58.2
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 1.2e-12 76.3 67 58.2
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 2.0e-12 75.5 67 56.7
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 2.7e-12 75.1 67 56.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 2.3e-11 72.0 63 58.7
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 5.0e-11 70.9 67 55.2
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 5.6e-10 67.4 67 56.7
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 3.6e-09 64.7 46 69.6
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.6e-09 64.7 69 52.2
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 4.7e-09 64.3 69 46.4
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 8.0e-09 63.5 42 69.0
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-08 62.8 50 70.0
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.1e-08 61.6 69 49.3
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.5e-07 59.3 49 67.3
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 2.6e-07 58.5 42 64.3
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 9.8e-07 56.6 49 63.3
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 1.3e-06 56.2 67 41.8
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 8.3e-06 53.5 46 52.2


User provided reference genes

Program Settings