Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 9.1e-298 1026.5 686 100.0
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 9.2e-242 840.5 698 82.7
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 3.8e-227 792.0 665 86.3
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.6e-225 785.0 667 84.0
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 8.1e-222 774.2 665 85.3
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 2.3e-184 649.8 727 69.1
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 2.2e-179 633.3 719 69.1
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 5.5e-178 628.6 523 64.1
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 2.9e-163 579.7 517 69.8
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.9e-163 579.7 517 70.0
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 1.2e-148 531.2 521 64.9
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 6.4e-142 508.8 527 62.4
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 7.0e-141 505.4 738 54.9
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 2.3e-136 490.3 458 57.0
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 6.4e-134 482.3 512 61.9
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 3.5e-132 476.5 509 60.7
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 7.8e-132 475.3 509 62.3
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.7e-131 474.2 535 58.1
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 8.6e-131 471.9 506 62.5
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.5e-130 470.3 509 62.1
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 4.3e-130 469.5 498 61.6
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 2.1e-129 467.2 514 61.3
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 5.2e-128 462.6 530 58.9
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 8.9e-128 461.8 522 59.8
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 2.0e-127 460.7 536 56.5
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 2.6e-127 460.3 522 59.6
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 3.4e-127 459.9 504 61.9
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 9.9e-127 458.4 433 67.2
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.7e-126 457.6 517 59.0
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 2.9e-126 456.8 526 59.3
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 2.9e-126 456.8 526 59.3
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 3.2e-125 453.4 455 63.7
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 2.7e-124 450.3 527 59.4
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 4.6e-124 449.5 509 59.5
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 6.0e-124 449.1 465 61.7
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 3.9e-123 446.4 511 57.3
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 5.1e-123 446.0 431 62.9
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 6.6e-123 445.7 433 65.6
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 1.9e-122 444.1 510 58.2
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 4.3e-122 443.0 362 73.2
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 5.6e-122 442.6 468 60.5
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.6e-121 441.0 460 61.1
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 2.1e-121 440.7 541 54.7
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.1e-121 440.7 359 72.7
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 2.1e-121 440.7 482 58.9
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 6.2e-121 439.1 461 61.8
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 6.2e-121 439.1 427 65.3
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 3.1e-120 436.8 487 60.8
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 1.2e-119 434.9 483 59.2
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 1.2e-119 434.9 414 53.9
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.2e-119 434.9 430 63.3
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 2.6e-119 433.7 480 58.8
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 5.8e-119 432.6 491 57.4
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 9.9e-119 431.8 529 56.1
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.7e-118 431.0 550 53.6
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.8e-118 429.9 521 55.7
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 8.4e-118 428.7 479 54.5
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.4e-118 428.7 737 44.2
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.4e-118 428.7 737 44.2
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 8.4e-118 428.7 656 61.9
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 1.1e-117 428.3 655 62.1
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 3.2e-117 426.8 481 53.4
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 7.1e-117 425.6 516 56.4
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 9.2e-117 425.2 513 54.0
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 3.5e-116 423.3 493 48.1
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.6e-116 422.9 478 58.8
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 7.8e-116 422.2 519 53.2
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 1.3e-115 421.4 513 55.8
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.3e-115 421.4 538 55.6
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 5.1e-115 419.5 434 60.8
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 1.1e-114 418.3 408 65.4
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 1.5e-114 417.9 521 57.0
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 5.6e-114 416.0 327 76.1
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 5.6e-114 416.0 411 64.7
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 1.8e-112 411.0 355 70.1
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 6.9e-112 409.1 517 52.8
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 2.0e-111 407.5 361 68.1
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 1.3e-110 404.8 362 69.1
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.7e-110 404.4 387 67.7
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.7e-110 404.4 351 68.1
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.2e-110 404.1 513 45.8
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 4.9e-110 402.9 512 54.3
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 1.4e-109 401.4 355 69.3
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.2e-108 398.3 542 52.2
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.1e-108 397.5 516 52.1
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 2.1e-108 397.5 328 75.3
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.5e-106 391.3 478 55.2
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 2.1e-105 387.5 319 72.1
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 5.3e-104 382.9 409 61.9
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 5.3e-104 382.9 409 61.9
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 1.5e-103 381.3 417 59.5
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 4.5e-103 379.8 409 61.6
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 2.2e-102 377.5 409 61.6
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 1.4e-101 374.8 409 61.4
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 4.2e-101 373.2 304 75.7
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 7.9e-100 369.0 346 63.0
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.0e-99 368.6 319 69.9
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 9.6e-98 362.1 387 61.2
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.8e-96 357.8 357 61.6
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 5.5e-93 346.3 425 56.0
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 7.9e-92 342.4 363 61.2
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 3.8e-70 270.4 355 43.9
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 1.7e-65 255.0 190 63.2
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 1.2e-63 248.8 498 36.3
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 1.0e-62 245.7 495 35.6
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.2e-53 213.0 202 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 7.5e-42 176.4 367 44.1
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.7e-38 165.2 356 36.5
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 4.3e-29 134.0 373 38.6
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 1.3e-25 122.5 203 57.1
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 6.4e-25 120.2 337 26.7
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.9e-24 118.6 295 29.5
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.0e-16 90.1 50 74.0
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.4e-08 65.9 100 36.0


User provided reference genes

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