Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0335171 Rosa chinensis HOM05D001129 ORTHO05D341140 6.4e-35 150.2 77 100.0
RcHm_v2.0_Chr1g0334021 Rosa chinensis HOM05D001129 ORTHO05D341948 1.1e-26 122.9 66 93.9
RcHm_v2.0_Chr1g0333081 Rosa chinensis HOM05D001129 ORTHO05D348234 3.7e-22 107.8 77 79.2
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 6.7e-16 87.0 50 92.0
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 1.9e-15 85.5 54 83.3
RcHm_v2.0_Chr1g0333951 Rosa chinensis HOM05D001129 ORTHO05D003814 7.4e-15 83.6 50 88.0
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 6.3e-14 80.5 54 77.8
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.3e-14 80.5 54 77.8
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.2e-12 76.3 54 74.1
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-12 76.3 54 83.3
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.9e-11 71.6 54 66.7
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 2.9e-11 71.6 54 70.4
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 5.0e-11 70.9 54 70.4
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 6.5e-11 70.5 54 70.4
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 6.5e-11 70.5 54 70.4
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 8.5e-11 70.1 54 64.8
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 1.1e-10 69.7 51 66.7
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 1.1e-10 69.7 54 68.5
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.1e-10 69.7 54 66.7
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 1.4e-10 69.3 56 62.5
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 1.4e-10 69.3 52 69.2
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.4e-10 69.3 54 70.4
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.4e-10 69.3 54 70.4
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 1.9e-10 68.9 54 68.5
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-10 68.9 55 65.5
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.5e-10 68.6 54 64.8
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 3.2e-10 68.2 54 66.7
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 3.2e-10 68.2 54 64.8
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 4.2e-10 67.8 54 64.8
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 5.5e-10 67.4 54 66.7
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 5.5e-10 67.4 54 64.8
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 7.2e-10 67.0 54 64.8
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 7.2e-10 67.0 54 64.8
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 7.2e-10 67.0 54 63.0
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 9.4e-10 66.6 54 66.7
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 9.4e-10 66.6 54 63.0
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.2e-09 66.2 54 66.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.6e-09 65.9 53 66.0
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.6e-09 65.9 53 66.0
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.6e-09 65.9 53 66.0
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.6e-09 65.9 54 64.8
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.6e-09 65.9 54 63.0
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.6e-09 65.9 54 63.0
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 1.6e-09 65.9 54 64.8
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 1.6e-09 65.9 54 63.0
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 2.1e-09 65.5 54 61.1
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 2.1e-09 65.5 51 64.7
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 2.1e-09 65.5 54 63.0
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 2.1e-09 65.5 54 64.8
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 2.7e-09 65.1 54 64.8
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 2.7e-09 65.1 54 64.8
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 2.7e-09 65.1 54 64.8
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 2.7e-09 65.1 54 64.8
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 2.7e-09 65.1 54 63.0
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.7e-09 65.1 52 63.5
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 3.6e-09 64.7 54 63.0
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 3.6e-09 64.7 52 65.4
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.6e-09 64.7 52 65.4
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.6e-09 64.7 52 65.4
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-09 64.7 54 64.8
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.6e-09 64.3 52 65.4
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.6e-09 64.3 52 65.4
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 4.6e-09 64.3 54 64.8
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 6.1e-09 63.9 54 63.0
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 6.1e-09 63.9 51 66.7
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 7.9e-09 63.5 54 64.8
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 7.9e-09 63.5 54 63.0
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 7.9e-09 63.5 54 63.0
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.0e-08 63.2 54 63.0
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.0e-08 63.2 54 63.0
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.0e-08 63.2 54 61.1
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 1.4e-08 62.8 54 61.1
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 1.4e-08 62.8 50 66.0
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 1.4e-08 62.8 50 66.0
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.4e-08 62.8 54 59.3
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.4e-08 62.8 52 65.4
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.4e-08 62.8 52 65.4
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.4e-08 62.8 54 63.0
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 1.8e-08 62.4 54 61.1
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.8e-08 62.4 54 63.0
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 1.8e-08 62.4 54 61.1
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-08 62.4 52 63.5
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 2.3e-08 62.0 52 61.5
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.3e-08 62.0 52 57.7
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.3e-08 62.0 54 61.1
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.3e-08 62.0 54 61.1
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 2.3e-08 62.0 54 61.1
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 2.3e-08 62.0 54 61.1
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 2.3e-08 62.0 54 64.8
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.1e-08 60.8 52 61.5
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 5.1e-08 60.8 54 63.0
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-08 60.8 52 61.5
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-08 60.8 52 63.5
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.1e-08 60.8 54 57.4
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 6.7e-08 60.5 52 57.7
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 6.7e-08 60.5 54 61.1
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 6.7e-08 60.5 54 61.1
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 6.7e-08 60.5 52 59.6
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 8.8e-08 60.1 48 64.6
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 8.8e-08 60.1 52 59.6
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.1e-07 59.7 52 59.6
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 1.1e-07 59.7 54 61.1
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.1e-07 59.7 54 57.4
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.1e-07 59.7 56 58.9
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.5e-07 59.3 52 59.6
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.5e-07 59.3 52 59.6
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 1.5e-07 59.3 54 57.4
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.6e-07 58.5 47 66.0
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.6e-07 58.5 47 66.0
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.6e-07 58.5 52 61.5
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 2.6e-07 58.5 58 58.6
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 3.3e-07 58.2 52 59.6
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 3.3e-07 58.2 52 57.7
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.4e-07 57.8 54 57.4
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 5.7e-07 57.4 54 59.3
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 5.7e-07 57.4 54 55.6
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 7.4e-07 57.0 47 63.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 7.4e-07 57.0 47 63.8
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 7.4e-07 57.0 47 63.8
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 7.4e-07 57.0 54 57.4
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.4e-07 57.0 54 57.4
SEGI_18924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 7.4e-07 57.0 54 57.4
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 9.7e-07 56.6 52 57.7
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 1.3e-06 56.2 55 60.0
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 2.2e-06 55.5 47 61.7
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.8e-06 55.1 54 50.0
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.7e-06 54.7 52 57.7
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.7e-06 54.7 51 58.8
RcHm_v2.0_Chr3g0492731 Rosa chinensis HOM05D001129 ORTHO05D019282 3.7e-06 54.7 51 56.9
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 4.8e-06 54.3 54 57.4
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 4.8e-06 54.3 52 57.7
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 6.3e-06 53.9 50 58.0
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 6.3e-06 53.9 53 58.5


User provided reference genes

Program Settings