Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334021 Rosa chinensis HOM05D001129 ORTHO05D341948 4.3e-43 177.6 88 100.0
RcHm_v2.0_Chr1g0335171 Rosa chinensis HOM05D001129 ORTHO05D341140 4.3e-27 124.4 66 93.9
RcHm_v2.0_Chr1g0333081 Rosa chinensis HOM05D001129 ORTHO05D348234 4.9e-23 110.9 81 77.8
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 8.2e-18 93.6 57 87.7
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 6.9e-17 90.5 52 88.5
RcHm_v2.0_Chr1g0333951 Rosa chinensis HOM05D001129 ORTHO05D003814 4.5e-16 87.8 50 90.0
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.2e-15 85.5 52 82.7
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.2e-15 85.5 52 82.7
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.2e-14 81.3 52 78.8
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 5.5e-14 80.9 52 88.5
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.0e-12 76.6 52 75.0
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.4e-12 76.3 52 69.2
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 3.0e-12 75.1 52 69.2
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.0e-12 75.1 52 73.1
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 3.0e-12 75.1 52 73.1
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 3.9e-12 74.7 52 71.2
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 5.1e-12 74.3 52 71.2
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 5.1e-12 74.3 50 74.0
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 6.7e-12 73.9 51 68.6
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 6.7e-12 73.9 52 73.1
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 6.7e-12 73.9 52 73.1
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 8.8e-12 73.6 52 69.2
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 8.8e-12 73.6 52 71.2
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.1e-11 73.2 52 71.2
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.5e-11 72.8 52 69.2
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.5e-11 72.8 52 67.3
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.0e-11 72.4 52 67.3
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 2.5e-11 72.0 52 69.2
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 2.5e-11 72.0 52 67.3
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 2.5e-11 72.0 52 67.3
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.5e-11 72.0 55 65.5
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 3.3e-11 71.6 52 71.2
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 3.3e-11 71.6 52 67.3
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 3.3e-11 71.6 52 67.3
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 3.3e-11 71.6 52 67.3
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 3.3e-11 71.6 52 65.4
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 5.7e-11 70.9 52 69.2
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 5.7e-11 70.9 52 69.2
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 5.7e-11 70.9 54 64.8
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 7.4e-11 70.5 52 67.3
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 7.4e-11 70.5 52 65.4
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 7.4e-11 70.5 52 65.4
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 7.4e-11 70.5 52 65.4
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 9.7e-11 70.1 52 63.5
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.7e-11 70.1 54 66.7
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.7e-11 70.1 54 66.7
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.7e-11 70.1 54 66.7
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 9.7e-11 70.1 52 65.4
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 9.7e-11 70.1 52 67.3
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 9.7e-11 70.1 52 67.3
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.3e-10 69.7 52 67.3
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.3e-10 69.7 52 67.3
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.3e-10 69.7 51 66.7
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 1.3e-10 69.7 52 67.3
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 1.3e-10 69.7 54 66.7
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-10 69.7 54 66.7
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 1.7e-10 69.3 52 65.4
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 1.7e-10 69.3 52 67.3
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.7e-10 69.3 54 66.7
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 2.2e-10 68.9 52 67.3
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 2.8e-10 68.6 51 68.6
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 2.8e-10 68.6 51 68.6
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 2.8e-10 68.6 51 68.6
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 2.8e-10 68.6 52 65.4
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 2.8e-10 68.6 54 66.7
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.8e-10 68.6 54 66.7
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 3.7e-10 68.2 52 67.3
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.7e-10 68.2 52 65.4
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 3.7e-10 68.2 51 68.6
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 3.7e-10 68.2 52 65.4
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 4.8e-10 67.8 54 59.3
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 4.8e-10 67.8 52 65.4
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 4.8e-10 67.8 52 65.4
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 4.8e-10 67.8 52 67.3
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 4.8e-10 67.8 52 63.5
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 4.8e-10 67.8 52 63.5
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 6.3e-10 67.4 52 63.5
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 6.3e-10 67.4 52 63.5
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 6.3e-10 67.4 52 65.4
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 8.2e-10 67.0 52 63.5
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 8.2e-10 67.0 50 68.0
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 8.2e-10 67.0 50 68.0
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 8.2e-10 67.0 52 65.4
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 8.2e-10 67.0 52 65.4
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 8.2e-10 67.0 52 63.5
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.1e-09 66.6 54 63.0
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.1e-09 66.6 52 63.5
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 1.1e-09 66.6 52 67.3
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.4e-09 66.2 54 59.3
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.8e-09 65.9 54 61.1
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.8e-09 65.9 54 63.0
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 1.8e-09 65.9 52 61.5
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 2.4e-09 65.5 64 54.7
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 2.4e-09 65.5 52 65.4
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.4e-09 65.5 52 59.6
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.4e-09 65.5 54 64.8
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 3.1e-09 65.1 52 61.5
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 3.1e-09 65.1 52 63.5
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 3.1e-09 65.1 52 63.5
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 4.1e-09 64.7 52 61.5
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 5.3e-09 64.3 48 66.7
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 61.5
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 61.5
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 63.5
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 63.5
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 59.6
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 5.3e-09 64.3 52 61.5
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 9.1e-09 63.5 52 59.6
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 1.2e-08 63.2 56 60.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.5e-08 62.8 47 68.1
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.5e-08 62.8 47 68.1
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 1.5e-08 62.8 50 62.0
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.5e-08 62.8 52 61.5
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 2.0e-08 62.4 54 59.3
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 2.6e-08 62.0 52 61.5
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 2.6e-08 62.0 52 61.5
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.6e-08 62.0 52 61.5
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 2.6e-08 62.0 52 57.7
SEGI_18924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 3.4e-08 61.6 52 59.6
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 3.4e-08 61.6 54 59.3
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 4.5e-08 61.2 47 66.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 4.5e-08 61.2 47 66.0
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 4.5e-08 61.2 47 66.0
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 5.9e-08 60.8 52 53.8
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 5.9e-08 60.8 53 62.3
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-07 60.1 52 59.6
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-07 60.1 52 59.6
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.0e-07 60.1 54 59.3
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 1.3e-07 59.7 47 63.8
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.7e-07 59.3 53 60.4
RcHm_v2.0_Chr3g0492731 Rosa chinensis HOM05D001129 ORTHO05D019282 2.2e-07 58.9 51 58.8
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-07 58.9 52 59.6
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 3.8e-07 58.2 48 60.4
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-07 57.4 49 59.2
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 8.5e-07 57.0 54 57.4
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 8.5e-07 57.0 54 55.6


User provided reference genes

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