Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333961 Rosa chinensis HOM05D001405 ORTHO05D001264 5.1e-62 241.1 142 100.0
FAN25G0913 Fragaria x ananassa HOM05D001405 ORTHO05D001264 3.0e-22 109.0 97 68.0
FvH4_3g30620 Fragaria vesca HOM05D001405 ORTHO05D001264 4.0e-22 108.6 97 67.0
FAN21G4010 Fragaria x ananassa HOM05D001405 ORTHO05D001264 4.0e-22 108.6 97 67.0
FAN11G2631 Fragaria x ananassa HOM05D001405 ORTHO05D001264 1.5e-21 106.7 97 66.0
Prupe.6G112800 Prunus persica HOM05D001405 ORTHO05D001264 7.5e-21 104.4 97 60.8
FAN16G0003 Fragaria x ananassa HOM05D001405 ORTHO05D001264 1.7e-20 103.2 97 64.9
MD11G1148200 Malus domestica HOM05D001405 ORTHO05D001264 7.7e-18 94.4 97 60.8
MD03G1128900 Malus domestica HOM05D001405 ORTHO05D001264 1.2e-15 87.0 97 54.6
ECA233G0579 Erigeron canadensis HOM05D001405 ORTHO05D001264 6.1e-15 84.7 98 55.1
HanXRQChr02g0055581 Helianthus annuus HOM05D001405 ORTHO05D001264 3.4e-13 79.0 96 51.0
QL01p015008 Quercus lobata HOM05D001405 ORTHO05D001264 5.7e-13 78.2 98 56.1
ClCG02G021620 Citrullus lanatus HOM05D001405 ORTHO05D001264 7.5e-13 77.8 97 50.5
Atru.chr3.3507 Acer truncatum HOM05D001405 ORTHO05D001264 3.7e-12 75.5 99 49.5
Atru.chr3.3514 Acer truncatum HOM05D001405 ORTHO05D001264 3.7e-12 75.5 99 49.5
Dinv16224 Davidia involucrata HOM05D001405 ORTHO05D001264 3.7e-12 75.5 96 51.0
Lsat_1_v5_gn_6_43340 Lactuca sativa HOM05D001405 ORTHO05D001264 3.7e-12 75.5 97 53.6
SGA_v2.0_scaffold277G46694 Striga asiatica HOM05D001405 ORTHO05D001264 3.7e-12 75.5 101 48.5
Migut.D02293 Erythranthe guttata HOM05D001405 ORTHO05D001264 6.3e-12 74.7 102 51.0
Dinv29381 Davidia involucrata HOM05D001405 ORTHO05D001264 8.3e-12 74.3 97 52.6
Lj2C1007T3 Lonicera japonica HOM05D001405 ORTHO05D001264 8.3e-12 74.3 97 50.5
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 1.8e-11 73.2 97 51.5
AUR62014976 Chenopodium quinoa HOM05D001405 ORTHO05D001264 4.1e-11 72.0 108 48.1
SalBow6G1068 Salvia bowleyana HOM05D001405 ORTHO05D001264 4.1e-11 72.0 100 49.0
Solyc11g066390.2 Solanum lycopersicum HOM05D001405 ORTHO05D001264 9.2e-11 70.9 108 42.6
MELO3C026955.2 Cucumis melo HOM05D001405 ORTHO05D001264 1.2e-10 70.5 101 46.5
Thecc.09G298500 Theobroma cacao HOM05D001405 ORTHO05D001264 1.2e-10 70.5 96 49.0
Ciclev10029196m.g Citrus clementina HOM05D001405 ORTHO05D001264 1.6e-10 70.1 108 47.2
CsaV3_6G014400 Cucumis sativus L. HOM05D001405 ORTHO05D001264 3.5e-10 68.9 118 45.8
TAR623G1214 Trochodendron aralioides HOM05D001405 ORTHO05D001264 3.5e-10 68.9 111 41.4
Sopen11g026140 Solanum pennellii HOM05D001405 ORTHO05D001264 4.5e-10 68.6 108 40.7
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 5.9e-10 68.2 101 46.5
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 5.9e-10 68.2 110 41.8
Hund01520 Selenicereus undatus HOM05D001405 ORTHO05D001264 5.9e-10 68.2 104 48.1
Nitab4.5_0004871g0010 Nicotiana tabacum HOM05D001405 ORTHO05D001264 7.8e-10 67.8 93 47.3
CiPaw.13G122800 Carya illinoinensis HOM05D001405 ORTHO05D001264 2.3e-09 66.2 101 48.5
AUR62029152 Chenopodium quinoa HOM05D001405 ORTHO05D001264 2.3e-09 66.2 108 46.3
Nitab4.5_0000173g0130 Nicotiana tabacum HOM05D001405 ORTHO05D001264 2.3e-09 66.2 67 56.7
vmacro14390 Vaccinium macrocarpon HOM05D001405 ORTHO05D001264 2.3e-09 66.2 102 43.1
Potri.004G216700 Populus trichocarpa HOM05D001405 ORTHO05D001264 3.8e-09 65.5 97 47.4
CiPaw.14G088600 Carya illinoinensis HOM05D001405 ORTHO05D001264 8.6e-09 64.3 98 48.0
GSVIVG01031462001 Vitis vinifera HOM05D001405 ORTHO05D001264 8.6e-09 64.3 62 58.1
Nn2g13855 Nelumbo nucifera HOM05D001405 ORTHO05D001264 1.1e-08 63.9 97 44.3
PGSC0003DMG400000417 Solanum tuberosum HOM05D001405 ORTHO05D001264 1.5e-08 63.5 89 44.9
DCAR_015506 Daucus carota HOM05D001405 ORTHO05D001264 1.9e-08 63.2 90 50.0
CSS0007322 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 2.5e-08 62.8 99 46.5
ATR0329G010 Amborella trichopoda HOM05D001405 ORTHO05D001264 3.3e-08 62.4 98 48.0
Gohir.A05G086900 Gossypium hirsutum HOM05D001405 ORTHO05D001264 3.3e-08 62.4 115 40.0
Sabra04G0147400 Salix brachista HOM05D001405 ORTHO05D001264 3.3e-08 62.4 95 45.3
vmacro03253 Vaccinium macrocarpon HOM05D001405 ORTHO05D001264 3.3e-08 62.4 91 45.1
CSS0026503 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 4.3e-08 62.0 99 46.5
Duzib150G0374 Durio zibethinus HOM05D001405 ORTHO05D001264 4.3e-08 62.0 97 46.4
Eucgr.B03930 Eucalyptus grandis HOM05D001405 ORTHO05D001264 7.3e-08 61.2 105 43.8
Aqoxy2G01655 Aquilegia oxysepala HOM05D001405 ORTHO05D001264 1.6e-07 60.1 105 43.8
Hma1.2p1_0051F.1_g029480 Hydrangea macrophylla HOM05D001405 ORTHO05D001264 1.6e-07 60.1 90 44.4
Manes.04G012850 Manihot esculenta HOM05D001405 ORTHO05D001264 1.6e-07 60.1 100 43.0
Nn6g35223 Nelumbo nucifera HOM05D001405 ORTHO05D001264 1.6e-07 60.1 90 45.6
Sc21g0000320 Simmondsia chinensis HOM05D001405 ORTHO05D001264 1.6e-07 60.1 101 46.5
Lalb_Chr01g0004601 Lupinus albus HOM05D001405 ORTHO05D001264 2.1e-07 59.7 115 41.7
Rhsim01G0210600 Rhododendron simsii HOM05D001405 ORTHO05D001264 2.1e-07 59.7 128 38.3
TWI79G1033 Tripterygium wilfordii HOM05D001405 ORTHO05D001264 2.1e-07 59.7 93 41.9
TWI79G1158 Tripterygium wilfordii HOM05D001405 ORTHO05D001264 2.1e-07 59.7 93 41.9
Ah.01g014110 Amaranthus hybridus HOM05D001405 ORTHO05D001264 3.6e-07 58.9 100 43.0
Duzib170G0604 Durio zibethinus HOM05D001405 ORTHO05D001264 3.6e-07 58.9 110 40.9
Gorai.006G104900 Gossypium raimondii HOM05D001405 ORTHO05D001264 4.7e-07 58.5 96 44.8
Potri.009G005100 Populus trichocarpa HOM05D001405 ORTHO05D001264 4.7e-07 58.5 95 44.2
RcHm_v2.0_Chr5g0056701 Rosa chinensis HOM05D001405 ORTHO05D001264 4.7e-07 58.5 34 85.3
Glyma.12G081300 Glycine max HOM05D001405 ORTHO05D001264 6.1e-07 58.2 104 43.3
Rhsim13G0100500 Rhododendron simsii HOM05D001405 ORTHO05D001264 6.1e-07 58.2 90 47.8
CSS0017734 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 8.0e-07 57.8 101 41.6
Sabra09G0002300 Salix brachista HOM05D001405 ORTHO05D001264 1.0e-06 57.4 97 45.4
CAN.G546.49 Capsicum annuum HOM05D001405 ORTHO05D001264 1.4e-06 57.0 78 48.7
Cpa.g.sc1.4 Carica papaya HOM05D001405 ORTHO05D001264 1.4e-06 57.0 109 41.3
Glyma.11G192700 Glycine max HOM05D001405 ORTHO05D001264 1.4e-06 57.0 115 42.6
TAR369G0490 Trochodendron aralioides HOM05D001405 ORTHO05D001264 2.3e-06 56.2 99 44.4
Gohir.A09G088700 Gossypium hirsutum HOM05D001405 ORTHO05D001264 3.0e-06 55.8 81 45.7
Psat7g191600 Pisum sativum HOM05D001405 ORTHO05D001264 4.0e-06 55.5 51 62.7
arahy.Tifrunner.gnm1.ann1.N5G7QD Arachis hypogaea HOM05D001405 ORTHO05D001264 5.2e-06 55.1 51 62.7
AL4G21940 Arabidopsis lyrata HOM05D001405 ORTHO05D001264 6.8e-06 54.7 83 48.2
Gohir.D09G088400 Gossypium hirsutum HOM05D001405 ORTHO05D001264 6.8e-06 54.7 91 44.0
Lj3g0015755 Lotus japonicus HOM05D001405 ORTHO05D001264 6.8e-06 54.7 82 45.1
Haze_23700 Corylus avellana HOM05D001405 ORTHO05D001264 8.9e-06 54.3 98 41.8
TPR.G36757 Trifolium pratense HOM05D001405 ORTHO05D001264 8.9e-06 54.3 80 46.2
VMungo1127G0649 Vigna mungo HOM05D001405 ORTHO05D001264 8.9e-06 54.3 84 44.0


User provided reference genes

Program Settings