Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333081 Rosa chinensis HOM05D001129 ORTHO05D348234 2.9e-88 328.6 167 100.0
RcHm_v2.0_Chr1g0334021 Rosa chinensis HOM05D001129 ORTHO05D341948 9.4e-23 110.9 81 77.8
RcHm_v2.0_Chr1g0335171 Rosa chinensis HOM05D001129 ORTHO05D341140 3.6e-22 109.0 77 79.2
RcHm_v2.0_Chr1g0333951 Rosa chinensis HOM05D001129 ORTHO05D003814 3.3e-20 102.4 155 45.2
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 2.6e-17 92.8 137 45.3
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 6.5e-16 88.2 151 41.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 1.6e-14 83.6 151 39.1
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.6e-14 83.6 151 39.1
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-13 80.5 145 44.8
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.0e-13 79.3 151 37.7
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.3e-12 75.9 59 66.1
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.3e-12 75.9 59 66.1
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.4e-12 75.5 59 66.1
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 7.5e-12 74.7 49 77.6
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 9.7e-12 74.3 75 54.7
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.2e-11 73.2 74 54.1
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.8e-11 72.8 47 76.6
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.8e-11 72.8 51 72.5
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 2.8e-11 72.8 51 72.5
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 3.7e-11 72.4 147 34.7
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 3.7e-11 72.4 51 70.6
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 4.8e-11 72.0 51 70.6
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 4.8e-11 72.0 51 68.6
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 6.3e-11 71.6 51 72.5
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 6.3e-11 71.6 51 72.5
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 8.2e-11 71.2 51 68.6
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.1e-10 70.9 51 70.6
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.4e-10 70.5 51 66.7
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 1.8e-10 70.1 51 66.7
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-10 70.1 62 62.9
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 2.4e-10 69.7 51 68.6
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 2.4e-10 69.7 51 66.7
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 2.4e-10 69.7 51 66.7
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.4e-10 69.7 54 64.8
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 2.4e-10 69.7 51 70.6
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.4e-10 69.7 51 70.6
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 3.1e-10 69.3 51 66.7
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 3.1e-10 69.3 152 34.9
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 3.1e-10 69.3 51 66.7
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 3.1e-10 69.3 51 66.7
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 3.1e-10 69.3 51 64.7
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 5.3e-10 68.6 51 64.7
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 5.3e-10 68.6 51 68.6
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 7.0e-10 68.2 51 64.7
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 7.0e-10 68.2 51 66.7
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 7.0e-10 68.2 51 64.7
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 7.0e-10 68.2 51 64.7
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 7.0e-10 68.2 51 68.6
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 9.1e-10 67.8 51 64.7
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 9.1e-10 67.8 51 66.7
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 9.1e-10 67.8 51 66.7
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 1.2e-09 67.4 115 40.9
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 66.7
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.2e-09 67.4 51 62.7
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.6e-09 67.0 51 64.7
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 1.6e-09 67.0 51 64.7
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 2.0e-09 66.6 51 66.7
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.7e-09 66.2 51 60.8
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 2.7e-09 66.2 152 35.5
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 2.7e-09 66.2 51 66.7
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 2.7e-09 66.2 152 35.5
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 3.5e-09 65.9 51 66.7
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.5e-09 65.9 51 64.7
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 3.5e-09 65.9 51 64.7
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.5e-09 65.9 51 64.7
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 3.5e-09 65.9 51 64.7
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 4.5e-09 65.5 51 64.7
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 4.5e-09 65.5 51 64.7
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 4.5e-09 65.5 51 66.7
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 4.5e-09 65.5 49 67.3
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 4.5e-09 65.5 49 67.3
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 4.5e-09 65.5 51 62.7
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 4.5e-09 65.5 51 62.7
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 5.9e-09 65.1 51 62.7
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.9e-09 65.1 51 64.7
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 5.9e-09 65.1 51 62.7
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 5.9e-09 65.1 51 64.7
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 7.7e-09 64.7 148 35.1
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 7.7e-09 64.7 51 62.7
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 7.7e-09 64.7 51 64.7
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 7.7e-09 64.7 51 64.7
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 7.7e-09 64.7 51 62.7
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 1.0e-08 64.3 48 66.7
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.7e-08 63.5 152 34.9
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 1.7e-08 63.5 51 60.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.2e-08 63.2 47 68.1
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.2e-08 63.2 47 68.1
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 2.2e-08 63.2 51 64.7
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.2e-08 63.2 51 58.8
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 2.9e-08 62.8 51 60.8
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 2.9e-08 62.8 51 62.7
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 2.9e-08 62.8 51 62.7
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 3.8e-08 62.4 51 60.8
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 3.8e-08 62.4 51 60.8
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 3.8e-08 62.4 51 64.7
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 60.8
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 60.8
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 60.8
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 62.7
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 5.0e-08 62.0 154 33.8
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 62.7
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 5.0e-08 62.0 51 60.8
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 6.5e-08 61.6 47 66.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 6.5e-08 61.6 47 66.0
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 6.5e-08 61.6 47 66.0
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.5e-08 61.6 51 62.7
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 8.5e-08 61.2 51 58.8
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 8.5e-08 61.2 152 33.6
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 8.5e-08 61.2 59 57.6
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 8.5e-08 61.2 51 62.7
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 1.1e-07 60.8 49 61.2
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.1e-07 60.8 51 62.7
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-07 60.8 51 62.7
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 1.1e-07 60.8 51 60.8
SEGI_18924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 1.5e-07 60.5 51 60.8
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-07 60.1 47 63.8
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.9e-07 60.1 152 33.6
RcHm_v2.0_Chr3g0492731 Rosa chinensis HOM05D001129 ORTHO05D019282 1.9e-07 60.1 55 54.5
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 2.5e-07 59.7 51 60.8
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 2.5e-07 59.7 51 56.9
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 2.5e-07 59.7 53 58.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.2e-07 58.9 51 60.8
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.2e-07 58.9 51 60.8
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 5.5e-07 58.5 52 61.5
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 9.4e-07 57.8 51 60.8
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 9.4e-07 57.8 58 55.2
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.2e-06 57.4 77 42.9
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.1e-06 56.6 45 62.2
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 8.0e-06 54.7 144 34.7


User provided reference genes

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