Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 2.0e-106 389.0 188 100.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 5.9e-106 387.5 188 99.5
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 8.5e-105 383.6 188 97.9
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-104 383.3 188 97.9
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 97.3
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.5e-104 382.1 188 97.3
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.4e-99 366.3 188 92.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.8e-99 365.9 179 97.2
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.8e-99 365.9 188 92.0
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.5e-98 362.8 188 91.5
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-98 362.1 188 89.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-98 362.1 188 89.9
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 7.7e-98 360.5 188 90.4
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.3e-97 359.8 188 89.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 5.0e-97 357.8 188 89.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 5.0e-97 357.8 188 90.4
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.1e-96 356.7 188 89.9
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 89.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.6e-95 352.8 187 89.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 7.9e-95 350.5 188 87.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.8e-94 349.4 186 86.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.8e-94 349.4 188 88.3
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 3.0e-94 348.6 186 86.6
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 86.7
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 8.8e-94 347.1 188 86.7
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.8e-94 347.1 186 86.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.1e-93 346.7 188 85.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.1e-93 346.7 186 84.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.1e-93 346.7 186 84.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 87.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 87.8
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 86.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 86.7
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.3e-93 345.1 188 87.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 85.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 85.1
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 85.6
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.7
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 85.1
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.7e-93 343.6 186 84.4
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 86.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 85.6
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 85.1
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 85.6
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 85.6
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 85.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 85.1
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 84.0
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 84.0
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 84.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 84.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 84.6
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-91 340.1 174 94.3
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.6
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 83.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 84.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.3e-91 337.8 190 84.7
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.3e-91 337.8 190 84.7
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 86.7
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 83.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.5
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 83.5
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 85.1
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 83.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 83.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 81.4
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 82.4
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 82.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.0
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 82.4
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 82.4
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 83.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.6e-87 326.2 180 85.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 83.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 82.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 83.0
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.3
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.8
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 79.3
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.9
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 78.2
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.8e-83 312.8 169 84.6
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-83 311.6 180 80.0
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 78.8
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 77.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 76.6
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.6
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 78.8
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.1e-80 303.5 189 78.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 77.1
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 78.2
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 77.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.1e-79 299.3 189 77.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 74.5
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 76.6
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 3.6e-79 298.5 188 77.7
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 77.8
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.7e-78 294.3 190 74.7
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 74.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.3e-75 284.6 188 75.5
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.1e-75 283.9 188 75.5
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 7.7e-74 280.8 188 69.7
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.1e-72 276.9 188 73.9
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.6e-71 273.1 179 73.2
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 3.6e-71 271.9 188 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 6.1e-71 271.2 188 64.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-70 270.4 177 73.4
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.0e-70 270.4 189 67.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.0e-70 270.4 179 72.1
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 67.0
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 67.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 3.7e-68 261.9 181 70.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 4.8e-68 261.5 187 64.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 64.7
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 7.7e-66 254.2 187 64.2
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 8.6e-65 250.8 165 77.0
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 6.8e-62 241.1 188 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.0e-58 229.6 177 61.6
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 8.6e-57 224.2 188 62.8
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.7e-50 202.6 173 64.7
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.6e-49 197.6 188 59.0
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 8.6e-49 197.6 121 76.0
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 5.8e-45 184.9 187 48.7
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.3e-44 183.7 109 78.9
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 4.9e-44 181.8 123 75.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 8.3e-44 181.0 115 73.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.8e-39 166.0 85 90.6
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 5.8e-37 158.3 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 4.7e-31 138.7 78 84.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.1e-26 123.2 91 68.1
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 3.0e-25 119.4 64 82.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.1e-11 71.6 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.4e-06 57.4 39 66.7


User provided reference genes

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