Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.8e-306 1055.0 513 100.0
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.8e-282 975.3 521 92.5
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 6.8e-282 973.4 516 92.6
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 9.6e-252 873.2 536 80.6
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 9.0e-250 866.7 577 78.0
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 1.2e-241 839.7 528 77.7
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.5e-241 839.3 516 83.1
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 6.5e-240 833.9 537 76.2
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 1.6e-238 829.3 537 76.2
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 3.5e-238 828.2 536 75.9
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 4.6e-238 827.8 535 76.6
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 1.3e-237 826.2 515 79.0
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 3.9e-237 824.7 437 92.4
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 9.6e-236 820.1 536 75.6
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 2.1e-235 818.9 544 74.3
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 2.1e-235 818.9 532 76.3
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 2.8e-235 818.5 525 75.8
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 4.8e-235 817.8 537 75.2
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 4.8e-235 817.8 545 74.7
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 1.4e-234 816.2 538 74.3
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 2.4e-234 815.5 528 74.8
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 6.9e-234 813.9 529 76.0
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 2.0e-233 812.4 537 74.5
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 5.0e-232 807.7 530 75.3
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 2.5e-231 805.4 537 74.7
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 6.1e-230 800.8 561 71.1
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 3.9e-229 798.1 537 73.6
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 2.5e-228 795.4 534 72.5
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 2.2e-227 792.3 539 72.7
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 2.8e-227 792.0 537 73.0
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 3.7e-227 791.6 535 73.1
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.8e-227 791.2 537 72.4
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 4.1e-226 788.1 537 73.9
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 8.5e-224 780.4 527 73.6
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 1.9e-223 779.2 620 65.6
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 4.6e-222 774.6 503 75.1
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 1.4e-221 773.1 527 73.4
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 2.3e-221 772.3 531 72.5
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 2.3e-221 772.3 544 71.5
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 5.1e-221 771.2 532 71.8
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.5e-220 769.6 538 72.3
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 6.3e-219 764.2 530 72.8
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 1.8e-218 762.7 530 72.8
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 4.1e-218 761.5 535 70.8
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 4.1e-218 761.5 537 70.4
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 5.3e-218 761.1 540 71.1
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 1.2e-217 760.0 525 71.8
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 2.0e-217 759.2 545 69.4
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 3.4e-217 758.4 535 71.6
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 3.8e-216 755.0 530 72.1
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 5.0e-216 754.6 539 69.6
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 5.5e-215 751.1 536 71.1
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 2.7e-214 748.8 538 69.0
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 3.6e-214 748.4 538 68.8
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 6.1e-214 747.7 538 68.8
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 6.1e-214 747.7 539 68.8
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 7.9e-214 747.3 536 69.2
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.0e-213 746.9 530 68.9
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 2.3e-213 745.7 539 68.6
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 5.1e-213 744.6 538 68.6
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 6.7e-213 744.2 542 68.6
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 3.3e-212 741.9 560 67.3
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 2.2e-211 739.2 538 67.8
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 2.8e-211 738.8 488 74.6
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 3.7e-211 738.4 512 68.9
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 1.1e-210 736.9 544 68.2
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 2.4e-210 735.7 547 67.1
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 5.3e-210 734.6 545 67.9
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 2.0e-209 732.6 546 67.0
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 5.5e-207 724.5 527 69.8
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 1.6e-206 723.0 558 65.4
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 1.6e-206 723.0 558 65.4
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 1.6e-206 723.0 512 68.6
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 6.1e-206 721.1 512 68.4
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 9.1e-202 707.2 614 61.7
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 2.0e-201 706.1 536 67.5
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 3.5e-201 705.3 527 67.2
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 1.7e-195 686.4 472 73.5
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 3.7e-195 685.3 450 73.6
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 1.1e-194 683.7 523 65.8
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 4.7e-190 668.3 491 67.2
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 6.1e-190 667.9 486 66.0
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 1.8e-186 656.4 432 76.6
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 3.5e-185 652.1 650 53.5
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.3e-184 649.4 595 58.2
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 1.5e-180 636.7 533 63.6
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.3e-171 607.1 412 73.8
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 2.2e-171 606.3 516 60.3
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 2.9e-163 579.3 541 54.7
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 3.3e-159 565.8 467 60.6
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.6e-158 563.5 532 55.1
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 1.2e-156 557.4 435 66.2
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.2e-147 526.6 285 89.1
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 9.0e-141 504.6 335 76.1
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 1.4e-138 497.3 329 73.6
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 4.6e-129 465.7 497 51.5
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 4.5e-124 449.1 350 64.3
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.2e-121 441.0 883 33.0
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 3.0e-120 436.4 289 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 2.8e-118 429.9 972 31.5
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 6.3e-118 428.7 958 31.0
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 2.0e-116 423.7 845 33.8
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.7e-115 420.6 891 32.0
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 1.5e-111 407.5 273 72.2
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 2.5e-111 406.8 309 65.7
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 4.2e-106 389.4 234 81.6
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 5.5e-106 389.0 311 65.9
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 2.5e-103 380.2 243 73.7
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 3.7e-94 349.7 262 66.4
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 2.7e-84 317.0 196 80.1
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 1.4e-72 278.1 170 81.2
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 4.9e-70 269.6 284 50.7
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.4e-69 268.1 260 56.2
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 4.1e-37 160.2 129 65.9
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 5.8e-31 139.8 789 22.1
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 2.9e-30 137.5 80 82.5
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 3.4e-23 114.0 245 26.5
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 2.9e-22 110.9 102 56.9
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 8.7e-19 99.4 68 76.5
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 4.8e-17 93.6 96 55.2
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.1e-16 92.4 252 27.4
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 5.5e-13 80.1 117 48.7
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 1.1e-10 72.4 333 23.7
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 4.8e-09 67.0 34 85.3
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.4e-08 65.5 39 79.5


User provided reference genes

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