Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.7e-163 578.6 282 100.0
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.3e-121 438.7 238 89.1
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 9.4e-116 420.6 223 91.0
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.6e-115 418.7 250 82.8
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 6.1e-115 417.9 209 94.3
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.4e-98 363.6 237 77.6
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 4.0e-98 362.1 227 77.5
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.3e-93 347.1 239 72.8
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 9.1e-87 324.3 231 67.1
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 9.1e-87 324.3 238 66.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.2e-86 323.9 230 67.0
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 5.9e-86 321.6 226 67.7
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.0e-85 320.9 230 65.7
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.2e-84 315.8 231 66.2
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 3.2e-84 315.8 313 57.2
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 3.2e-84 315.8 218 68.8
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 5.5e-84 315.1 229 65.5
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.5e-84 315.1 231 67.1
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.6e-83 313.5 218 68.3
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.6e-83 313.5 218 68.3
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.6e-83 312.4 218 67.9
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 6.1e-83 311.6 233 66.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.4e-81 305.8 229 65.9
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 2.4e-79 299.7 231 64.5
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 4.1e-79 298.9 234 63.7
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 4.1e-79 298.9 231 64.5
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 3.5e-78 295.8 218 66.1
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.0e-77 294.3 253 59.7
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.9e-77 292.7 230 61.3
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 5.0e-77 292.0 237 62.0
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 6.6e-77 291.6 237 60.8
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 3.3e-76 289.3 231 63.6
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.6e-75 287.0 231 62.8
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 3.6e-75 285.8 233 60.5
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 6.1e-75 285.0 229 62.0
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 8.0e-75 284.6 217 62.2
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.8e-74 283.5 297 50.5
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.8e-74 283.5 241 59.8
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 2.3e-74 283.1 247 58.3
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 2.3e-74 283.1 217 62.2
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 4.0e-74 282.3 229 61.1
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 6.8e-74 281.6 226 61.5
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 6.8e-74 281.6 223 61.9
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.6e-73 279.6 243 56.8
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 4.4e-73 278.9 223 61.4
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 5.7e-73 278.5 223 61.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 7.5e-73 278.1 226 59.7
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 7.5e-73 278.1 226 60.2
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.3e-72 277.3 234 58.1
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.3e-72 277.3 230 57.8
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.7e-72 276.9 229 60.7
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.7e-72 276.9 226 60.2
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 2.2e-72 276.6 232 59.1
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 2.2e-72 276.6 230 58.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 2.2e-72 276.6 232 59.1
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 2.9e-72 276.2 220 58.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.9e-72 276.2 214 63.6
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 4.9e-72 275.4 224 59.4
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.4e-71 273.9 226 58.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.8e-71 273.5 239 57.7
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.8e-71 273.5 242 55.0
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 2.4e-71 273.1 229 60.3
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 3.2e-71 272.7 264 56.1
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.2e-71 272.7 215 62.3
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.2e-70 270.8 223 60.5
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 1.6e-70 270.4 222 60.4
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.7e-70 269.6 225 58.2
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 4.6e-70 268.9 229 59.4
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 5.9e-70 268.5 229 57.6
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.0e-69 267.7 222 58.6
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 5.0e-69 265.4 222 59.0
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 7.3e-68 261.5 209 61.2
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.0e-66 257.7 254 53.5
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.8e-66 256.9 221 57.9
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 1.5e-65 253.8 230 55.7
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 1.5e-65 253.8 230 54.8
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.4e-65 252.7 235 52.3
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 9.8e-65 251.1 247 51.8
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.9e-63 246.9 210 57.6
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 9.2e-63 244.6 205 61.0
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 7.8e-62 241.5 203 59.6
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 3.0e-61 239.6 206 58.3
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 3.3e-60 236.1 204 58.3
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.3e-60 236.1 244 52.9
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 3.3e-60 236.1 229 50.2
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.6e-59 233.8 205 57.1
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 2.1e-59 233.4 219 52.5
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.8e-59 233.0 227 49.8
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 8.1e-59 231.5 170 65.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 8.1e-59 231.5 207 57.0
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.8e-58 230.3 227 48.5
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 4.9e-56 222.2 180 62.2
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 5.4e-55 218.8 245 48.6
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 6.0e-54 215.3 227 54.2
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 7.8e-54 214.9 208 53.8
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 2.3e-53 213.4 139 66.9
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.0e-53 213.0 181 59.7
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 6.2e-51 205.3 150 67.3
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 2.2e-48 196.8 260 40.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 3.7e-48 196.1 240 41.7
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 2.1e-43 180.3 241 43.6
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.8e-42 177.2 169 54.4
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 3.1e-34 149.8 197 45.7
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.9e-26 122.1 236 33.9
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.9e-26 122.1 236 33.9
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 6.7e-21 105.5 78 61.5
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.8e-13 80.9 90 43.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 9.0e-10 68.6 77 41.6
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 2.5e-07 60.5 51 56.9


User provided reference genes

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