Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 5.0e-122 441.0 209 100.0
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.1e-111 404.4 207 92.8
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 6.7e-111 404.1 201 95.0
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.1e-110 403.3 201 95.0
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 2.5e-105 385.6 201 90.0
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 6.7e-103 377.5 201 85.6
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 2.6e-102 375.6 201 85.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 4.4e-102 374.8 201 86.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.4e-102 374.8 199 86.9
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.2e-101 372.5 201 85.6
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 4.8e-101 371.3 201 85.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 4.8e-101 371.3 201 85.1
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 8.2e-101 370.5 201 84.6
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 8.2e-101 370.5 201 84.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 5.3e-100 367.9 201 85.6
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 2.6e-99 365.5 207 80.7
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 3.5e-99 365.2 200 84.5
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 3.5e-99 365.2 201 87.6
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 3.5e-99 365.2 196 85.7
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 4.5e-99 364.8 199 84.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 7.7e-99 364.0 201 83.1
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 7.7e-99 364.0 201 83.1
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 1.0e-98 363.6 196 85.7
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.7e-98 362.8 201 84.1
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 6.5e-98 360.9 201 83.1
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 8.5e-98 360.5 195 85.1
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 8.5e-98 360.5 195 85.1
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.1e-97 360.1 197 84.3
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.5e-97 359.8 195 85.1
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 4.2e-97 358.2 201 86.1
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 5.5e-97 357.8 201 82.6
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 6.1e-96 354.4 201 82.6
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 6.1e-96 354.4 187 87.2
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 8.0e-96 354.0 201 82.6
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.0e-95 353.6 201 80.1
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.4e-95 353.2 201 79.6
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 5.2e-95 351.3 196 81.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 5.7e-94 347.8 202 79.7
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 7.5e-94 347.4 202 78.7
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 6.3e-93 344.4 201 80.6
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.1e-92 343.6 199 81.4
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 3.1e-92 342.0 180 90.0
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 7.0e-92 340.9 198 78.8
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 5.9e-91 337.8 199 76.9
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.0e-90 337.0 198 80.8
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.0e-90 337.0 232 70.3
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.0e-90 337.0 195 80.5
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.0e-90 337.0 201 78.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.8e-90 335.1 195 81.0
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 8.5e-90 334.0 200 80.5
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 3.2e-89 332.0 196 77.6
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.2e-89 331.6 201 77.1
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.6e-88 329.7 196 76.5
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.6e-88 329.7 196 76.5
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.6e-88 329.7 201 78.6
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 2.1e-88 329.3 199 77.9
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 6.1e-88 327.8 195 74.9
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 8.0e-88 327.4 196 76.0
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 1.0e-87 327.0 196 76.0
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 1.0e-87 327.0 196 76.0
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.8e-87 326.2 197 72.1
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 2.3e-87 325.9 201 75.6
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 3.0e-87 325.5 201 74.1
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 6.8e-87 324.3 208 75.5
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 8.8e-87 323.9 200 76.5
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.5e-86 323.2 195 77.4
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.4e-86 322.0 197 71.1
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 3.4e-86 322.0 199 74.4
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 7.5e-86 320.9 195 76.9
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 2.2e-85 319.3 198 73.7
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 2.8e-85 318.9 201 74.1
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 8.3e-85 317.4 201 73.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.4e-84 316.6 179 82.7
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.1e-84 315.5 179 80.4
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 5.4e-84 314.7 202 74.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.6e-83 313.2 184 80.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 2.0e-83 312.8 202 74.3
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 7.7e-83 310.8 202 73.3
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.3e-82 310.1 202 73.8
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.7e-82 309.7 202 72.8
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 5.0e-82 308.1 196 75.5
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 5.2e-79 298.1 180 78.9
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 2.0e-78 296.2 184 77.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.9e-77 291.6 172 75.6
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.8e-76 289.7 180 75.0
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 2.3e-71 272.7 151 85.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.5e-70 270.0 195 61.5
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.5e-70 270.0 195 61.5
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.5e-70 270.0 195 61.5
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.1e-68 263.8 158 79.7
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.9e-68 263.1 201 62.7
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 3.2e-68 262.3 151 82.8
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 9.2e-68 260.8 151 82.8
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.9e-65 253.1 138 86.2
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.9e-65 253.1 214 62.1
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 6.2e-64 248.1 202 57.4
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 5.8e-62 241.5 182 64.8
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 4.9e-53 211.8 147 69.4
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 2.4e-52 209.5 199 48.7
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.4e-44 181.8 103 78.6
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 7.8e-43 177.9 195 46.7
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 1.6e-40 170.2 121 71.9
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.1e-40 169.9 106 78.3
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.8e-40 169.5 87 87.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.1e-40 167.9 87 85.1
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.1e-39 166.0 97 82.5
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.1e-36 154.8 87 79.3
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.1e-31 141.0 85 78.8
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.3e-29 134.0 79 79.7
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.2e-27 127.5 70 81.4
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 2.1e-27 126.7 163 38.7
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.4e-23 114.0 87 62.1
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 4.8e-16 89.0 53 73.6
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.8e-15 87.0 190 28.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 9.0e-15 84.7 58 70.7
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 8.4e-13 78.2 43 76.7


User provided reference genes

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