Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0329131 Rosa chinensis HOM05D000001 ORTHO05D019353 1.1e-53 213.0 106 100.0
RcHm_v2.0_Chr1g0328871 Rosa chinensis HOM05D000001 ORTHO05D346942 4.1e-48 194.5 100 97.0
RcHm_v2.0_Chr4g0386761 Rosa chinensis HOM05D000001 ORTHO05D019353 1.0e-14 83.6 52 78.8
Prupe.1G018800 Prunus persica HOM05D000001 ORTHO05D000003 1.7e-14 82.8 51 78.4
RcHm_v2.0_Chr1g0329071 Rosa chinensis HOM05D000001 ORTHO05D022898 3.0e-14 82.0 46 84.8
RcHm_v2.0_Chr4g0389371 Rosa chinensis HOM05D000001 ORTHO05D019353 1.1e-13 80.1 51 76.5
RcHm_v2.0_Chr4g0389041 Rosa chinensis HOM05D000001 ORTHO05D022898 2.5e-13 79.0 74 56.8
RcHm_v2.0_Chr4g0389181 Rosa chinensis HOM05D000001 ORTHO05D050711 3.3e-13 78.6 50 78.0
RcHm_v2.0_Chr4g0394511 Rosa chinensis HOM05D000001 ORTHO05D019353 9.5e-13 77.0 51 72.5
Rhsim02G0027300 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.1e-11 73.6 46 76.1
TAR365G0450 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.1e-11 72.0 50 66.0
FAN22G0774 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.0e-11 71.6 46 73.9
FvH4_4g12100 Fragaria vesca HOM05D000001 ORTHO05D000003 5.2e-11 71.2 45 75.6
FAN12G0324 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.2e-11 71.2 45 75.6
RcHm_v2.0_Chr4g0389271 Rosa chinensis HOM05D000001 ORTHO05D019353 8.9e-11 70.5 50 70.0
PGSC0003DMG400032268 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.0e-10 69.3 48 70.8
RcHm_v2.0_Chr3g0482401 Rosa chinensis HOM05D000001 ORTHO05D000003 2.6e-10 68.9 41 80.5
Duzib151G0567 Durio zibethinus HOM05D000001 ORTHO05D000003 7.6e-10 67.4 45 68.9
FAN12G1636 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-10 67.4 45 73.3
Rhsim02G0027400 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.6e-10 67.4 64 51.6
RcHm_v2.0_Chr2g0124781 Rosa chinensis HOM05D000001 ORTHO05D000003 3.8e-09 65.1 39 76.9
RcHm_v2.0_Chr4g0387251 Rosa chinensis HOM05D000001 ORTHO05D019353 4.9e-09 64.7 42 73.8
Sopen09g031310 Solanum pennellii HOM05D000001 ORTHO05D000003 3.2e-08 62.0 45 66.7
RcHm_v2.0_Chr4g0386651 Rosa chinensis HOM05D000001 ORTHO05D026270 4.1e-08 61.6 42 71.4
Nitab4.5_0001547g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-07 60.1 43 67.4
RcHm_v2.0_Chr4g0387051 Rosa chinensis HOM05D000001 ORTHO05D019353 1.2e-07 60.1 42 66.7
Thecc.04G236000 Theobroma cacao HOM05D000001 ORTHO05D000003 1.2e-07 60.1 41 65.9
Solyc09g082450.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.6e-07 59.7 41 70.7
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 4.6e-07 58.2 42 61.9
Peaxi162Scf00092g00003 Petunia axillaris HOM05D000001 ORTHO05D000003 4.6e-07 58.2 41 65.9
PGSC0003DMG400032267 Solanum tuberosum HOM05D000001 ORTHO05D026270 4.6e-07 58.2 40 70.0
CSS0041055 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.8e-07 57.4 39 66.7
COL.COLO4_21527 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.8e-07 57.4 41 61.0
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 1.0e-06 57.0 39 66.7
TWI32G0293 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.0e-06 57.0 69 40.6
Gorai.011G165700 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.3e-06 56.6 39 66.7
Potri.018G071800 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.7e-06 56.2 50 50.0
GSVIVG01017365001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.7e-06 56.2 115 31.3
QL02p086985 Quercus lobata HOM05D000001 ORTHO05D000003 2.3e-06 55.8 50 50.0
Ciclev10004307m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.9e-06 55.1 39 71.8
Gohir.A10G118300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.9e-06 55.1 39 64.1
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.1e-06 54.7 38 65.8
DCAR_030677 Daucus carota HOM05D001769 ORTHO05D000003 5.1e-06 54.7 40 65.0
Thecc.02G336600 Theobroma cacao HOM05D000001 ORTHO05D000003 5.1e-06 54.7 48 54.2
Aqoxy5G02691 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 6.6e-06 54.3 48 50.0
Gohir.D10G148400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 6.6e-06 54.3 40 62.5
Potri.010G083700 Populus trichocarpa HOM05D000001 ORTHO05D000003 6.6e-06 54.3 39 64.1
TAR383G0736 Trochodendron aralioides HOM05D000001 ORTHO05D000003 8.6e-06 53.9 102 35.3


User provided reference genes

Program Settings