Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 0.0e+00 1148.7 570 100.0
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.0e-298 1028.5 567 89.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 8.6e-294 1013.1 560 89.5
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.4e-275 952.6 574 82.9
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.6e-268 929.1 569 81.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 2.2e-249 865.5 572 74.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 5.0e-249 864.4 583 73.1
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.9e-246 854.7 538 75.7
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 1.9e-245 852.4 576 74.3
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.7e-241 839.3 569 72.4
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.1e-239 832.4 574 70.7
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.3e-238 828.9 569 71.0
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.0e-237 825.9 569 70.3
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 7.4e-237 823.9 573 70.7
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 6.3e-236 820.8 574 70.6
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.1e-235 820.1 568 70.4
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.8e-235 819.3 578 68.9
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.1e-235 818.5 579 69.1
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.5e-234 816.2 581 69.0
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 6.5e-233 810.8 575 69.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 6.5e-233 810.8 578 68.5
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.4e-232 809.7 571 69.5
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.9e-232 809.3 580 68.1
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.0e-230 803.5 577 68.1
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 8.8e-230 800.4 577 67.8
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 7.4e-229 797.3 582 66.8
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.1e-227 793.5 568 69.2
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 3.5e-226 788.5 611 65.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 5.9e-226 787.7 543 70.0
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.0e-225 786.9 542 69.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 5.0e-225 784.6 575 67.5
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 6.5e-225 784.3 577 66.6
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.1e-224 783.5 575 67.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.1e-224 783.5 547 69.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.9e-224 782.7 566 65.9
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.9e-224 782.7 539 71.2
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 2.7e-223 778.9 578 65.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 4.7e-223 778.1 536 68.8
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 6.1e-223 777.7 557 66.2
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.4e-222 776.5 567 66.7
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.0e-222 775.4 551 67.0
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 8.8e-222 773.9 576 65.5
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.2e-220 769.2 577 65.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 8.2e-220 767.3 577 66.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.1e-219 766.9 580 64.3
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.8e-219 766.1 583 64.8
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.2e-218 763.5 570 65.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 2.0e-218 762.7 576 64.8
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 7.7e-218 760.8 575 66.3
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.5e-216 755.7 570 63.9
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 3.2e-216 755.4 569 64.9
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.2e-216 754.2 514 70.2
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 6.8e-214 747.7 577 63.6
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 8.8e-214 747.3 569 64.3
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 8.8e-214 747.3 536 66.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 3.4e-213 745.3 627 60.4
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.4e-213 745.0 569 63.8
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.2e-212 742.7 573 63.0
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.8e-212 742.3 572 64.5
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 4.8e-212 741.5 573 63.5
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 6.3e-212 741.1 569 63.4
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 2.4e-211 739.2 536 66.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.4e-211 739.2 546 66.3
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 7.7e-210 734.2 566 62.7
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 7.7e-210 734.2 587 61.8
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 4.2e-208 728.4 570 62.1
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 5.7e-205 718.0 569 62.4
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 4.9e-204 714.9 650 56.2
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 7.7e-202 707.6 569 59.9
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.3e-201 706.8 574 62.4
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.9e-201 705.7 571 59.0
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.6e-201 704.5 463 73.0
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 9.2e-195 684.1 489 67.7
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.7e-193 679.9 460 68.9
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.8e-190 669.8 572 57.3
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.2e-189 667.2 460 67.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.5e-189 666.8 462 69.3
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.4e-182 643.7 614 56.0
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 4.0e-182 642.1 460 66.7
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 5.8e-181 638.3 432 70.8
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 7.5e-181 637.9 542 60.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.3e-177 627.1 463 67.0
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.1e-176 624.0 402 75.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.4e-174 617.1 547 59.6
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.2e-170 604.0 464 64.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.2e-167 594.0 511 59.3
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.1e-166 589.3 533 57.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 9.9e-165 584.3 543 59.5
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 2.6e-157 559.7 546 50.4
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 5.3e-150 535.4 719 47.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 5.3e-150 535.4 579 47.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.9e-148 529.6 351 73.5
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 3.3e-144 516.2 530 47.7
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 6.2e-143 511.9 538 48.3
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.3e-140 504.2 395 62.3
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 7.1e-139 498.4 320 71.2
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.7e-138 496.5 518 51.5
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.2e-117 427.9 296 67.6
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.5e-115 420.2 355 57.5
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 3.5e-109 399.8 268 70.9
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 5.0e-108 396.0 271 71.2
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.6e-104 383.6 268 66.0
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.7e-98 362.8 239 72.0
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.8e-94 350.9 522 42.0
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.3e-89 334.0 567 37.4
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 4.5e-85 319.7 249 60.6
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.0e-76 292.0 471 35.9
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.7e-71 274.6 208 63.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.7e-68 264.6 195 66.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.2e-66 258.5 528 35.0
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.2e-61 241.9 614 29.0
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.3e-60 237.7 520 31.2
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.2e-55 221.1 140 73.6
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 5.1e-52 209.9 404 34.7
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 8.1e-50 202.6 124 77.4
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.1e-33 149.1 133 56.4
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.6e-29 135.2 97 66.0
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.1e-25 120.9 110 57.3
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.3e-23 115.5 57 98.2
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.2e-23 114.8 500 26.0
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.5e-23 113.2 83 65.1
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 8.4e-23 112.8 84 66.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 2.3e-20 104.8 110 50.0
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.0e-20 104.4 168 41.7
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.9e-19 101.7 105 48.6
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.7e-19 100.1 111 45.0
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 4.1e-17 94.0 57 68.4
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.1e-17 94.0 114 45.6
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.9e-17 93.2 183 34.4
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.0e-15 89.4 74 55.4
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.4e-08 64.3 55 54.5
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 5.0e-07 60.5 48 60.4
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 8.5e-07 59.7 35 74.3
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 8.5e-07 59.7 35 74.3
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.9e-06 58.5 45 66.7
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 9.4e-06 56.2 46 60.9


User provided reference genes

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