Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322821 Rosa chinensis HOM05D006597 ORTHO05D008141 2.0e-59 232.3 120 100.0
RcHm_v2.0_Chr1g0323231 Rosa chinensis HOM05D006597 ORTHO05D008141 6.5e-34 147.5 87 90.8
FAN03G1163 Fragaria x ananassa HOM05D006597 ORTHO05D008141 4.7e-32 141.4 87 82.8
FvH4_7g02800 Fragaria vesca HOM05D006597 ORTHO05D008141 5.2e-31 137.9 87 80.5
FAN06G5124 Fragaria x ananassa HOM05D006597 ORTHO05D008141 5.2e-31 137.9 87 80.5
FAN10G4184 Fragaria x ananassa HOM05D006597 ORTHO05D008141 8.8e-31 137.1 87 80.5
MD07G1037100 Malus domestica HOM05D006597 ORTHO05D008141 5.9e-27 124.4 89 77.5
MD02G1289900 Malus domestica HOM05D006597 ORTHO05D008141 7.7e-27 124.0 89 78.7
Prupe.7G052900 Prunus persica HOM05D006597 ORTHO05D008141 2.2e-26 122.5 86 80.2
CiPaw.03G070700 Carya illinoinensis HOM05D006597 ORTHO05D008141 9.4e-25 117.1 86 74.4
Cfa007827 Carpinus fangiana HOM05D006597 ORTHO05D008141 2.7e-24 115.5 87 71.3
QL02p057713 Quercus lobata HOM05D006597 ORTHO05D008141 6.1e-24 114.4 87 69.0
Thecc.04G117800 Theobroma cacao HOM05D006597 ORTHO05D008141 8.0e-24 114.0 89 73.0
Duzib133G0875 Durio zibethinus HOM05D006597 ORTHO05D008141 8.8e-23 110.5 89 73.0
COL.COLO4_00245 Corchorus olitorius HOM05D006597 ORTHO05D008141 1.2e-22 110.2 88 70.5
CANSAT78G2380 Cannabis sativa HOM05D006597 ORTHO05D008141 1.5e-22 109.8 89 66.3
Gohir.A07G078800 Gossypium hirsutum HOM05D006597 ORTHO05D008141 1.5e-22 109.8 86 73.3
Haze_14242 Corylus avellana HOM05D006597 ORTHO05D008141 5.7e-22 107.8 109 58.7
Haze_14245 Corylus avellana HOM05D006597 ORTHO05D008141 5.7e-22 107.8 109 58.7
Gorai.001G089500 Gossypium raimondii HOM05D006597 ORTHO05D008141 5.7e-22 107.8 86 72.1
Gohir.D07G083900 Gossypium hirsutum HOM05D006597 ORTHO05D008141 7.5e-22 107.5 86 72.1
GSVIVG01030813001 Vitis vinifera HOM05D006597 ORTHO05D008141 7.5e-22 107.5 90 68.9
vmacro22382 Vaccinium macrocarpon HOM05D006597 ORTHO05D008141 2.8e-21 105.5 96 64.6
vmacro23322 Vaccinium macrocarpon HOM05D006597 ORTHO05D008141 2.8e-21 105.5 96 64.6
Atru.chr1.1860 Acer truncatum HOM05D006597 ORTHO05D008141 3.7e-21 105.1 87 67.8
Atru.chr1.1862 Acer truncatum HOM05D006597 ORTHO05D008141 3.7e-21 105.1 87 67.8
Dinv28218 Davidia involucrata HOM05D006597 ORTHO05D008141 1.4e-20 103.2 90 70.0
Manes.02G075700 Manihot esculenta HOM05D006597 ORTHO05D008141 7.0e-20 100.9 87 63.2
TAR374G1305 Trochodendron aralioides HOM05D006597 ORTHO05D008141 9.1e-20 100.5 86 67.4
TWI53G1911 Tripterygium wilfordii HOM05D006597 ORTHO05D008141 1.2e-19 100.1 89 62.9
Nn4g24232 Nelumbo nucifera HOM05D006597 ORTHO05D008141 3.5e-19 98.6 68 75.0
AUR62038689 Chenopodium quinoa HOM05D006597 ORTHO05D008141 1.0e-18 97.1 88 64.8
arahy.Tifrunner.gnm1.ann1.VDX6J0 Arachis hypogaea HOM05D006597 ORTHO05D008141 1.3e-18 96.7 86 65.1
Ciclev10012334m.g Citrus clementina HOM05D006597 ORTHO05D008141 1.3e-18 96.7 74 71.6
Eucgr.J01591 Eucalyptus grandis HOM05D006597 ORTHO05D008141 1.3e-18 96.7 89 59.6
Potri.017G125400 Populus trichocarpa HOM05D006597 ORTHO05D008141 1.7e-18 96.3 89 62.9
Sc14g0006400 Simmondsia chinensis HOM05D006597 ORTHO05D008141 1.7e-18 96.3 89 60.7
arahy.Tifrunner.gnm1.ann1.B6CCGS Arachis hypogaea HOM05D006597 ORTHO05D008141 2.2e-18 95.9 86 65.1
AUR62018202 Chenopodium quinoa HOM05D006597 ORTHO05D008141 2.2e-18 95.9 83 65.1
Cpa.g.sc116.41 Carica papaya HOM05D006597 ORTHO05D008141 2.9e-18 95.5 94 66.0
Lj6g0007596 Lotus japonicus HOM05D006597 ORTHO05D008141 6.5e-18 94.4 69 71.0
Glyma.18G039800 Glycine max HOM05D006597 ORTHO05D008141 1.1e-17 93.6 87 58.6
SGA_v2.0_scaffold13G06385 Striga asiatica HOM05D006597 ORTHO05D008141 1.5e-17 93.2 87 64.4
Migut.L00456 Erythranthe guttata HOM05D006597 ORTHO05D008141 2.5e-17 92.4 65 73.8
Phvul.001G230700 Phaseolus vulgaris HOM05D006597 ORTHO05D008141 2.5e-17 92.4 87 57.5
THA.LOC104805614 Tarenaya hassleriana HOM05D006597 ORTHO05D008141 2.5e-17 92.4 73 67.1
MSTRG.15326 Avicennia marina HOM05D006597 ORTHO05D008141 4.2e-17 91.7 86 61.6
EL10Ac2g03151 Beta vulgaris HOM05D006597 ORTHO05D008141 5.5e-17 91.3 82 59.8
TPR.G14059 Trifolium pratense HOM05D006597 ORTHO05D008141 5.5e-17 91.3 82 65.9
Psat5g122160 Pisum sativum HOM05D006597 ORTHO05D008141 7.2e-17 90.9 85 62.4
MELO3C020256.2 Cucumis melo HOM05D006597 ORTHO05D008141 2.7e-16 89.0 81 58.0
Medtr3g065930 Medicago truncatula HOM05D006597 ORTHO05D008141 3.6e-16 88.6 87 60.9
Hma1.2p1_2448F.1_g322330 Hydrangea macrophylla HOM05D006597 ORTHO05D008141 4.7e-16 88.2 84 60.7
Hma1.2p1_2448F.1_g322335 Hydrangea macrophylla HOM05D006597 ORTHO05D008141 4.7e-16 88.2 84 60.7
ClCG05G011250 Citrullus lanatus HOM05D006597 ORTHO05D008141 1.4e-15 86.7 81 58.0
PGR042G1892 Punica granatum HOM05D006597 ORTHO05D008141 1.4e-15 86.7 100 57.0
CsaV3_3G021180 Cucumis sativus L. HOM05D006597 ORTHO05D008141 1.8e-15 86.3 81 56.8
Os02g0135900 Oryza sativa ssp. japonica HOM05D006597 ORTHO05D008141 1.8e-15 86.3 83 59.0
VMungo1383G1559 Vigna mungo HOM05D006597 ORTHO05D008141 1.8e-15 86.3 87 55.2
AL7G50500 Arabidopsis lyrata HOM05D006597 ORTHO05D008141 2.3e-15 85.9 66 69.7
Glyma.11G216800 Glycine max HOM05D006597 ORTHO05D008141 3.0e-15 85.5 87 54.0
PSO478G0171 Papaver somniferum HOM05D006597 ORTHO05D008141 4.0e-15 85.1 65 70.8
Lj2A430G17 Lonicera japonica HOM05D006597 ORTHO05D008141 5.2e-15 84.7 51 82.4
Cc07_g08000 Coffea canephora HOM05D006597 ORTHO05D008141 6.8e-15 84.3 85 57.6
Carub.0007s3596 Capsella rubella HOM05D006597 ORTHO05D008141 8.8e-15 84.0 66 68.2
PSO017G3284 Papaver somniferum HOM05D006597 ORTHO05D008141 8.8e-15 84.0 65 67.7
ECA232G4064 Erigeron canadensis HOM05D006597 ORTHO05D008141 1.2e-14 83.6 85 55.3
Thhalv10027873m.g Eutrema salsugineum HOM05D006597 ORTHO05D008141 1.5e-14 83.2 75 64.0
A04p12510 Brassica napus HOM05D006597 ORTHO05D008141 2.0e-14 82.8 80 60.0
Nitab4.5_0004472g0030 Nicotiana tabacum HOM05D006597 ORTHO05D008141 2.0e-14 82.8 90 54.4
PGSC0003DMG400030609 Solanum tuberosum HOM05D006597 ORTHO05D008141 2.0e-14 82.8 87 56.3
Aa31LG9G16360 Aethionema arabicum HOM05D006597 ORTHO05D008141 3.4e-14 82.0 64 67.2
Lalb_Chr18g0053401 Lupinus albus HOM05D006597 ORTHO05D008141 3.4e-14 82.0 57 73.7
Solyc02g091530.4 Solanum lycopersicum HOM05D006597 ORTHO05D008141 4.4e-14 81.6 74 58.1
CAN.G1061.39 Capsicum annuum HOM05D006597 ORTHO05D008141 5.7e-14 81.3 90 54.4
Rhsim10G0080600 Rhododendron simsii HOM05D006597 ORTHO05D008141 7.5e-14 80.9 51 84.3
SpUn1104_0010 Schrenkiella parvula HOM05D006597 ORTHO05D008141 7.5e-14 80.9 75 61.3
Zm00001eb231700 Zea mays HOM05D006597 ORTHO05D008141 9.8e-14 80.5 81 55.6
SalBow7G2937 Salvia bowleyana HOM05D006597 ORTHO05D008141 1.3e-13 80.1 87 57.5
Nitab4.5_0011641g0010 Nicotiana tabacum HOM05D006597 ORTHO05D008141 1.7e-13 79.7 90 54.4
BcaB06g27377 Brassica carinata HOM05D006597 ORTHO05D008141 2.2e-13 79.3 71 62.0
C04p46260 Brassica napus HOM05D006597 ORTHO05D008141 2.2e-13 79.3 71 62.0
Aqoxy3G00058 Aquilegia oxysepala HOM05D006597 ORTHO05D008141 2.8e-13 79.0 87 56.3
CARHR262440 Cardamine hirsuta HOM05D006597 ORTHO05D008141 2.8e-13 79.0 72 61.1
Peaxi162Scf01159g00228 Petunia axillaris HOM05D006597 ORTHO05D008141 2.8e-13 79.0 87 54.0
Actinidia37172 Actinidia chinensis HOM05D006597 ORTHO05D008141 3.7e-13 78.6 65 70.8
BraA04t16911Z Brassica rapa HOM05D006597 ORTHO05D008141 3.7e-13 78.6 82 58.5
FAN01G1326 Fragaria x ananassa HOM05D006597 ORTHO05D008141 3.7e-13 78.6 87 54.0
DCAR_010755 Daucus carota HOM05D006597 ORTHO05D008141 4.8e-13 78.2 85 55.3
Lsat_1_v5_gn_4_157700 Lactuca sativa HOM05D006597 ORTHO05D008141 1.1e-12 77.0 89 52.8
Hund15551 Selenicereus undatus HOM05D006597 ORTHO05D008141 1.1e-12 77.0 48 81.2
Sed0021212 Sechium edule HOM05D006597 ORTHO05D008141 1.8e-12 76.3 81 51.9
HPP92_003922 Vanilla planifolia HOM05D006597 ORTHO05D008141 1.8e-12 76.3 85 52.9
HanXRQChr09g0262181 Helianthus annuus HOM05D006597 ORTHO05D008141 3.1e-12 75.5 85 52.9
BolC4t26210H Brassica oleracea HOM05D006597 ORTHO05D008141 4.1e-12 75.1 73 60.3
AT5G39790 Arabidopsis thaliana HOM05D006597 ORTHO05D008141 1.2e-11 73.6 78 57.7
Sabra17G0105600 Salix brachista HOM05D006597 ORTHO05D008141 1.6e-11 73.2 88 51.1
Oeu050986.2 Olea europaea HOM05D006597 ORTHO05D008141 7.7e-11 70.9 125 42.4
CDE04G0866 Ceratophyllum demersum HOM05D006597 ORTHO05D008141 3.8e-10 68.6 62 56.5
CDE06G1942 Ceratophyllum demersum HOM05D006597 ORTHO05D008141 5.0e-10 68.2 72 55.6
Actinidia36373 Actinidia chinensis HOM05D006597 ORTHO05D008141 1.9e-09 66.2 67 59.7
ATR0681G203 Amborella trichopoda HOM05D006597 ORTHO05D008141 2.5e-09 65.9 50 66.0
unitig_32.g11880 Utricularia gibba HOM05D006597 ORTHO05D008141 1.2e-08 63.5 49 65.3
SEGI_39726 Sequoiadendron giganteum HOM05D006597 ORTHO05D008141 1.0e-07 60.5 83 47.0
TPR.G14050 Trifolium pratense HOM05D000408 ORTHO05D008141 9.8e-06 53.9 44 65.9


User provided reference genes

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