Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322811 Rosa chinensis HOM05D001129 ORTHO05D013941 1.1e-22 109.0 50 100.0
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.0e-13 78.2 37 91.9
RcHm_v2.0_Chr5g0072811 Rosa chinensis HOM05D001129 ORTHO05D013941 2.6e-13 77.8 38 89.5
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.4e-13 77.4 37 91.9
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.4e-13 77.4 37 91.9
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 3.4e-13 77.4 37 91.9
RcHm_v2.0_Chr1g0322391 Rosa chinensis HOM05D001129 ORTHO05D003814 4.5e-13 77.0 37 91.9
SEGI_02273 Sequoiadendron giganteum HOM05D001129 ORTHO05D013941 5.9e-13 76.6 46 71.7
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 7.7e-13 76.3 37 89.2
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 7.7e-13 76.3 37 89.2
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.0e-12 75.9 37 89.2
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.0e-12 75.9 37 89.2
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.3e-12 75.5 37 91.9
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 1.3e-12 75.5 37 91.9
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.3e-12 75.5 37 91.9
BcaB03g13434 Brassica carinata HOM05D001129 ORTHO05D013941 1.7e-12 75.1 40 82.5
BcaNung06830 Brassica carinata HOM05D001129 ORTHO05D013941 1.7e-12 75.1 40 82.5
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.7e-12 75.1 37 89.2
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 89.2
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 83.8
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 83.8
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 89.2
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 89.2
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 89.2
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 2.9e-12 74.3 37 89.2
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 89.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 89.2
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 89.2
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 86.5
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 89.2
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 3.8e-12 73.9 37 89.2
RcHm_v2.0_Chr1g0333061 Rosa chinensis HOM05D001129 ORTHO05D003814 5.0e-12 73.6 37 89.2
RcHm_v2.0_Chr5g0072801 Rosa chinensis HOM05D001129 ORTHO05D013941 5.0e-12 73.6 46 73.9
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 5.0e-12 73.6 37 86.5
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 86.5
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 89.2
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 89.2
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 86.5
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 86.5
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 86.5
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.5e-12 73.2 38 84.2
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 86.5
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 6.5e-12 73.2 37 89.2
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 83.8
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 83.8
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 89.2
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 86.5
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 8.5e-12 72.8 37 83.8
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.1e-11 72.4 37 83.8
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 86.5
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 86.5
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.1e-11 72.4 37 83.8
RcHm_v2.0_Chr1g0334041 Rosa chinensis HOM05D001129 ORTHO05D013941 1.1e-11 72.4 37 89.2
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.1e-11 72.4 44 72.7
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.4e-11 72.0 37 83.8
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.4e-11 72.0 37 83.8
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.4e-11 72.0 37 83.8
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.4e-11 72.0 37 86.5
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.9e-11 71.6 37 83.8
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.9e-11 71.6 37 83.8
Gohir.A08G164850 Gossypium hirsutum HOM05D001129 ORTHO05D013941 1.9e-11 71.6 37 83.8
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 1.9e-11 71.6 37 86.5
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.9e-11 71.6 37 83.8
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 81.1
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 83.8
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 83.8
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 83.8
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 83.8
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 83.8
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 81.1
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 2.5e-11 71.2 37 81.1
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 83.8
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 83.8
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 83.8
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 83.8
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 83.8
RcHm_v2.0_Chr5g0074171 Rosa chinensis HOM05D001129 ORTHO05D013941 3.2e-11 70.9 37 83.8
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 3.2e-11 70.9 37 81.1
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.2e-11 70.5 37 83.8
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 4.2e-11 70.5 37 83.8
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 4.2e-11 70.5 37 81.1
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 4.2e-11 70.5 37 83.8
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 5.5e-11 70.1 37 83.8
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 5.5e-11 70.1 37 83.8
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 7.2e-11 69.7 37 81.1
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 7.2e-11 69.7 37 81.1
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 7.2e-11 69.7 37 83.8
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 7.2e-11 69.7 37 83.8
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 9.4e-11 69.3 37 81.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 9.4e-11 69.3 37 83.8
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.4e-11 69.3 37 83.8
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 9.4e-11 69.3 37 83.8
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-10 68.9 37 83.8
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-10 68.9 37 83.8
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 1.2e-10 68.9 37 81.1
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.6e-10 68.6 37 75.7
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.6e-10 68.6 37 81.1
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.6e-10 68.6 37 81.1
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 2.1e-10 68.2 37 78.4
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.1e-10 68.2 37 81.1
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.1e-10 68.2 37 81.1
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 2.1e-10 68.2 35 88.6
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.7e-10 67.8 37 81.1
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 2.7e-10 67.8 35 85.7
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 2.7e-10 67.8 47 68.1
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 3.6e-10 67.4 37 75.7
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 3.6e-10 67.4 37 75.7
FvH4_3g40440 Fragaria vesca HOM05D001129 ORTHO05D013941 6.1e-10 66.6 37 81.1
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 1.0e-09 65.9 37 83.8
PRCOL_00003896 Prasinoderma coloniale HOM05D001129 ORTHO05D003814 2.0e-08 61.6 37 70.3
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.7e-08 60.1 50 62.0
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 2.8e-07 57.8 61 52.5
Cre01.g041855 Chlamydomonas reinhardtii HOM05D001129 ORTHO05D003157 3.7e-07 57.4 37 64.9
Ca_13897_v3 Cicer arietinum L. HOM05D001129 ORTHO05D013941 1.4e-06 55.5 38 60.5
CBR_g49621 Chara braunii HOM05D001129 ORTHO05D003814 1.8e-06 55.1 37 59.5
AL7G53150 Arabidopsis lyrata HOM05D001129 ORTHO05D026758 3.1e-06 54.3 38 60.5
Actinidia25195 Actinidia chinensis HOM05D001129 ORTHO05D013941 4.1e-06 53.9 28 85.7
AL2G24780 Arabidopsis lyrata HOM05D001129 ORTHO05D026758 9.1e-06 52.8 38 57.9


User provided reference genes

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