Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 2.7e-155 552.0 285 100.0
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 6.7e-138 494.2 292 88.4
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.1e-135 485.0 285 87.7
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 7.0e-135 484.2 263 94.7
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 7.0e-135 484.2 263 94.7
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 1.6e-118 429.9 262 81.7
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 1.4e-114 416.8 265 81.5
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 3.1e-111 405.6 261 79.3
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 5.4e-111 404.8 258 78.7
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 2.7e-110 402.5 253 78.7
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 6.1e-107 391.3 257 76.3
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 2.3e-106 389.4 257 75.5
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.3e-106 389.4 247 79.4
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 3.0e-106 389.0 241 80.9
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 4.0e-106 388.7 261 77.4
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 6.8e-106 387.9 240 79.6
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 2.0e-105 386.3 250 76.0
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 4.4e-105 385.2 259 75.7
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 2.9e-104 382.5 252 75.4
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 2.9e-104 382.5 240 78.8
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 3.7e-104 382.1 263 73.8
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 2.4e-103 379.4 252 76.6
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 3.2e-103 379.0 262 76.0
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 5.4e-103 378.3 248 77.4
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 7.0e-103 377.9 260 76.2
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 7.0e-103 377.9 257 75.9
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 7.0e-103 377.9 260 73.5
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 9.2e-103 377.5 257 74.3
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 9.2e-103 377.5 244 75.8
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 9.2e-103 377.5 230 79.6
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 2.0e-102 376.3 257 75.5
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 2.7e-102 375.9 259 73.4
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 3.5e-102 375.6 256 76.6
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 4.6e-102 375.2 258 74.4
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 6.0e-102 374.8 263 74.5
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.0e-101 374.0 251 74.5
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.0e-101 374.0 235 79.1
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 1.7e-101 373.2 239 75.7
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 5.0e-101 371.7 260 74.2
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 5.0e-101 371.7 260 72.7
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 6.6e-101 371.3 255 74.5
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 8.6e-101 370.9 265 72.8
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 1.9e-100 369.8 237 77.2
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.9e-100 369.8 254 74.8
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 7.3e-100 367.9 232 77.2
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 7.3e-100 367.9 255 71.8
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 7.3e-100 367.9 258 71.7
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 2.1e-99 366.3 229 79.5
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 4.7e-99 365.2 255 70.6
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 1.4e-98 363.6 222 82.0
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 1.8e-98 363.2 255 71.8
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 2.3e-98 362.8 259 71.0
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 2.3e-98 362.8 255 71.0
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 6.8e-98 361.3 246 74.4
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 6.8e-98 361.3 262 71.4
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 8.9e-98 360.9 255 71.0
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 1.2e-97 360.5 271 69.0
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 3.4e-97 359.0 259 69.9
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 7.5e-97 357.8 258 70.9
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 9.8e-97 357.5 261 70.1
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 1.7e-96 356.7 246 72.8
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 2.2e-96 356.3 231 76.6
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.9e-96 355.9 250 72.8
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.9e-96 355.9 263 70.0
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 3.7e-96 355.5 250 72.8
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 4.9e-96 355.1 238 74.8
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 8.3e-96 354.4 261 69.7
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 8.3e-96 354.4 273 67.8
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 1.4e-95 353.6 259 69.9
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 1.9e-95 353.2 237 73.8
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 4.1e-95 352.1 272 67.6
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 1.6e-94 350.1 264 67.8
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 1.6e-94 350.1 264 67.8
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 1.6e-94 350.1 272 68.0
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 1.6e-94 350.1 272 68.0
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 3.5e-94 349.0 250 70.8
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 3.5e-94 349.0 274 66.8
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 1.0e-93 347.4 269 66.5
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 1.7e-93 346.7 256 69.5
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 6.6e-93 344.7 272 66.9
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 8.6e-93 344.4 237 72.2
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 2.5e-92 342.8 270 66.7
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 5.6e-92 341.7 212 79.7
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 5.6e-92 341.7 336 56.8
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 1.2e-91 340.5 230 70.4
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 6.2e-91 338.2 242 71.1
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 8.1e-91 337.8 250 66.4
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 3.1e-90 335.9 233 72.1
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 8.9e-90 334.3 237 69.2
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 8.9e-90 334.3 323 56.7
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 3.4e-89 332.4 210 75.7
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.7e-88 330.1 208 78.4
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 1.7e-88 330.1 213 75.6
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 2.2e-88 329.7 231 73.6
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 4.9e-88 328.6 211 79.1
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 8.3e-88 327.8 216 76.4
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 9.2e-87 324.3 216 76.9
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 1.2e-86 323.9 208 75.0
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.3e-84 315.8 198 79.3
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 8.1e-83 311.2 199 78.9
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 1.1e-74 284.3 201 68.7
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 9.0e-74 281.2 336 50.6
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 1.7e-69 266.9 227 61.7
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 3.9e-69 265.8 174 76.4
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 6.2e-67 258.5 167 79.6
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 2.7e-62 243.0 237 52.3
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 2.5e-60 236.5 235 51.1
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 8.1e-59 231.5 244 50.8
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 2.0e-57 226.9 134 78.4
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 2.3e-53 213.4 250 48.8
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 5.6e-52 208.8 136 77.2
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 3.2e-47 193.0 137 72.3
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 1.3e-45 187.6 146 69.2
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 6.7e-45 185.3 146 68.5
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 1.1e-44 184.5 146 68.5
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.9e-42 175.3 124 68.5
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 2.0e-41 173.7 117 76.1
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 5.9e-41 172.2 175 56.6
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 1.7e-35 154.1 123 66.7
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 4.5e-33 146.0 96 72.9
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 2.2e-32 143.7 95 74.7
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 4.2e-31 139.4 100 72.0
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 1.4e-26 124.4 73 76.7
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.0e-20 104.0 111 52.3
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 5.5e-15 85.9 47 76.6
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 2.0e-12 77.4 171 29.2
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 1.4e-10 71.2 114 43.9
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 1.2e-09 68.2 114 43.0
CSS0050126 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D033925 3.6e-06 56.6 46 65.2


User provided reference genes

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