Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 1.4e-96 356.3 188 100.0
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 7.5e-45 184.5 91 97.8
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 7.8e-26 121.3 96 61.5
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.7e-25 120.2 80 70.0
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 1.7e-25 120.2 80 70.0
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 2.3e-25 119.8 81 69.1
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 3.0e-25 119.4 82 68.3
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 8.6e-25 117.9 83 67.5
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 3.3e-24 115.9 81 64.2
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 7.3e-24 114.8 83 60.2
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 7.3e-24 114.8 82 63.4
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 2.8e-23 112.8 81 65.4
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 3.6e-23 112.5 91 54.9
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 3.6e-23 112.5 91 54.9
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 4.7e-23 112.1 81 65.4
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 6.2e-23 111.7 81 65.4
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 8.1e-23 111.3 81 64.2
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 1.1e-22 110.9 83 61.4
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 1.8e-22 110.2 81 64.2
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 1.8e-22 110.2 81 64.2
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 3.1e-22 109.4 81 64.2
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 3.1e-22 109.4 81 64.2
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 3.1e-22 109.4 81 64.2
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 3.1e-22 109.4 81 64.2
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 3.1e-22 109.4 118 50.8
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 3.1e-22 109.4 85 56.5
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 64.2
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 64.2
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 64.2
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 64.2
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 63.0
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 4.0e-22 109.0 81 63.0
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 5.2e-22 108.6 82 64.6
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 6.9e-22 108.2 105 52.4
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 9.0e-22 107.8 81 63.0
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 2.6e-21 106.3 82 57.3
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 2.6e-21 106.3 82 62.2
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 3.4e-21 105.9 72 69.4
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 4.4e-21 105.5 72 68.1
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 7.6e-21 104.8 79 59.5
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 9.9e-21 104.4 75 60.0
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 9.9e-21 104.4 79 59.5
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.3e-20 104.0 67 71.6
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 1.3e-20 104.0 81 56.8
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 2.2e-20 103.2 80 56.2
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-20 102.8 72 66.7
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-20 102.8 72 66.7
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 2.9e-20 102.8 75 62.7
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 2.9e-20 102.8 81 59.3
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 2.9e-20 102.8 80 57.5
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 3.8e-20 102.4 84 59.5
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.8e-20 102.4 75 62.7
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 1.1e-19 100.9 88 53.4
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.9e-19 100.1 71 64.8
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 3.2e-19 99.4 69 68.1
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 7.1e-19 98.2 83 54.2
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 1.2e-18 97.4 92 50.0
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.6e-18 97.1 71 62.0
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.6e-18 97.1 71 62.0
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 1.6e-18 97.1 77 59.7
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 2.1e-18 96.7 71 60.6
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 4.6e-18 95.5 72 62.5
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 4.6e-18 95.5 73 61.6
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 6.0e-18 95.1 80 52.5
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 6.0e-18 95.1 71 62.0
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 7.8e-18 94.7 69 65.2
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.0e-17 94.4 68 64.7
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.7e-17 93.6 73 57.5
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 3.9e-17 92.4 73 60.3
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 5.1e-17 92.0 76 56.6
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 6.6e-17 91.7 76 55.3
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.1e-16 90.9 69 62.3
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 1.5e-16 90.5 74 54.1
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 1.9e-16 90.1 68 60.3
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 4.3e-16 89.0 72 56.9
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 5.6e-16 88.6 70 57.1
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 5.6e-16 88.6 66 60.6
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 7.3e-16 88.2 72 55.6
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 1.3e-15 87.4 71 54.9
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 1.3e-15 87.4 69 55.1
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 1.6e-15 87.0 76 55.3
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 2.1e-15 86.7 71 59.2
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 2.1e-15 86.7 71 57.7
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 3.6e-15 85.9 67 59.7
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 3.6e-15 85.9 67 58.2
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 3.6e-15 85.9 67 58.2
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 8.1e-15 84.7 71 56.3
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 1.1e-14 84.3 73 47.9
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 1.4e-14 84.0 67 55.2
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 1.4e-14 84.0 64 57.8
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 1.8e-14 83.6 67 55.2
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 2.4e-14 83.2 60 63.3
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 3.1e-14 82.8 73 52.1
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 4.0e-14 82.4 68 54.4
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 5.3e-14 82.0 46 80.4
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 6.9e-14 81.6 68 55.9
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 6.9e-14 81.6 68 54.4
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 6.9e-14 81.6 68 51.5
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 2.0e-13 80.1 57 61.4
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 4.5e-13 79.0 44 81.8
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 4.5e-13 79.0 68 51.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.8e-13 78.6 83 48.2
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 1.3e-12 77.4 50 70.0
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 1.7e-12 77.0 44 77.3
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 2.2e-12 76.6 85 42.4
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 2.9e-12 76.3 52 67.3
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 3.8e-12 75.9 57 56.1
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 8.4e-12 74.7 50 66.0
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 1.1e-11 74.3 77 41.6
Zm00001eb372000 Zea mays HOM05D005999 ORTHO05D003360 1.4e-11 73.9 85 43.5
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 1.9e-11 73.6 52 59.6
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.9e-11 73.6 44 75.0
Glyma.01G161800 Glycine max HOM05D005999 ORTHO05D003360 1.9e-11 73.6 62 58.1
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 4.2e-11 72.4 79 40.5
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 9.3e-11 71.2 44 70.5
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 9.3e-11 71.2 85 38.8
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 2.1e-10 70.1 84 39.3
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 3.5e-10 69.3 80 42.5
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 3.5e-10 69.3 47 63.8
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 6.0e-10 68.6 83 39.8
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 7.9e-10 68.2 42 69.0
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 7.9e-10 68.2 82 40.2
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 1.0e-09 67.8 79 40.5
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 1.0e-09 67.8 79 40.5
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 1.8e-09 67.0 42 69.0
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 1.8e-09 67.0 82 42.7
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 2.3e-09 66.6 80 41.2
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 2.3e-09 66.6 87 41.4
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 3.9e-09 65.9 74 37.8
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 3.9e-09 65.9 74 40.5
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 5.1e-09 65.5 81 38.3
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 6.7e-09 65.1 78 39.7
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 1.1e-08 64.3 83 38.6
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 1.1e-08 64.3 81 39.5
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 1.9e-08 63.5 91 38.5
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 1.9e-08 63.5 72 37.5
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 2.5e-08 63.2 90 36.7
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 2.5e-08 63.2 85 40.0
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 3.3e-08 62.8 57 49.1
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 4.3e-08 62.4 70 42.9
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 5.6e-08 62.0 74 40.5
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 5.6e-08 62.0 58 48.3
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 5.6e-08 62.0 69 43.5
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 7.4e-08 61.6 81 37.0
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 9.6e-08 61.2 69 42.0
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 9.6e-08 61.2 71 39.4
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 1.3e-07 60.8 74 37.8
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 3.7e-07 59.3 68 42.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 4.8e-07 58.9 75 41.3
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 6.2e-07 58.5 78 39.7
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 6.2e-07 58.5 79 36.7
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 8.1e-07 58.2 74 35.1
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 8.1e-07 58.2 73 38.4
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 1.1e-06 57.8 73 37.0
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 1.1e-06 57.8 69 44.9
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 1.8e-06 57.0 69 40.6
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 1.8e-06 57.0 71 36.6
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 1.8e-06 57.0 72 36.1
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 2.4e-06 56.6 73 38.4
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 3.1e-06 56.2 69 40.6
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 4.0e-06 55.8 71 32.4
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 4.0e-06 55.8 72 36.1
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 4.0e-06 55.8 72 36.1
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 4.0e-06 55.8 78 37.2
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 5.3e-06 55.5 68 39.7
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 5.3e-06 55.5 68 33.8
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 6.9e-06 55.1 73 37.0
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 6.9e-06 55.1 69 37.7
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 6.9e-06 55.1 75 38.7
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 6.9e-06 55.1 69 43.5
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 6.9e-06 55.1 67 35.8
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 9.0e-06 54.7 73 39.7


User provided reference genes

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