Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 5.4e-240 833.9 431 100.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 9.0e-227 790.0 431 94.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.0e-227 790.0 431 94.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.5e-226 787.7 431 94.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.4e-225 783.5 431 94.0
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.4e-224 781.9 431 93.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.7e-223 778.5 431 93.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 3.9e-198 694.9 435 83.7
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.2e-184 647.5 484 73.1
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.2e-176 622.1 438 76.7
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 6.1e-167 591.3 470 68.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.3e-166 589.3 440 73.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.0e-166 588.6 441 71.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 8.8e-166 587.4 490 67.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.2e-165 587.0 440 71.1
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.3e-164 583.6 441 70.1
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.7e-164 583.2 432 71.8
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 6.3e-164 581.3 442 71.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.4e-163 579.3 441 70.7
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 9.1e-163 577.4 445 70.8
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.0e-162 576.2 437 70.9
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 5.9e-162 574.7 435 70.6
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 7.7e-162 574.3 456 69.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-161 573.2 426 72.1
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.3e-161 572.8 441 70.3
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.3e-161 572.8 446 71.1
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 6.6e-161 571.2 437 69.6
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.3e-158 562.8 445 68.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.5e-157 560.1 433 70.2
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-157 559.7 441 69.2
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.7e-157 558.1 442 69.0
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.7e-156 556.6 443 67.5
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 4.9e-156 555.1 441 68.7
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.4e-155 553.5 440 68.6
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-155 552.0 445 68.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.7e-154 549.3 443 68.4
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 2.7e-154 549.3 440 69.1
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 3.5e-154 548.9 441 66.4
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 5.9e-154 548.1 443 68.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.3e-153 547.0 443 66.6
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.3e-153 547.0 443 66.8
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.3e-153 546.2 437 67.3
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 5.0e-153 545.0 454 68.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-152 543.9 443 67.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.1e-152 543.9 444 67.6
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.5e-152 543.5 450 66.9
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.5e-152 543.5 433 68.8
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.9e-152 543.1 451 67.8
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 4.3e-152 542.0 437 67.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-151 540.4 440 68.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.0e-150 537.3 433 67.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.3e-150 536.2 438 68.0
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.0e-150 535.4 435 66.4
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.8e-150 534.6 444 67.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.5e-149 533.5 438 66.0
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.0e-149 533.1 447 65.5
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.0e-149 533.1 438 66.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 7.5e-149 531.2 438 65.5
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 9.8e-149 530.8 457 64.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.3e-148 530.4 438 65.3
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.9e-148 529.3 442 66.3
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 6.4e-148 528.1 441 64.9
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 7.0e-147 524.6 456 66.0
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.0e-146 521.5 436 64.7
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 7.8e-146 521.2 434 66.8
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 7.8e-146 521.2 452 63.1
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.0e-145 520.8 456 63.8
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-145 520.0 434 66.1
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.0e-145 519.2 449 65.9
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 8.6e-145 517.7 440 65.9
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.5e-144 516.9 448 66.5
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.5e-144 516.9 421 65.3
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.6e-143 513.5 449 62.8
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.1e-142 509.2 435 64.1
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 4.0e-142 508.8 452 61.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.8e-142 508.1 436 65.1
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 3.4e-141 505.8 431 64.0
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.8e-141 504.2 439 63.1
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.8e-141 504.2 439 63.1
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.7e-140 503.4 448 63.8
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 4.6e-138 495.4 470 59.8
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.0e-137 492.7 438 63.2
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 3.0e-137 492.7 443 63.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 5.1e-137 491.9 495 57.8
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 9.5e-136 487.6 445 61.1
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.2e-135 487.3 437 62.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.4e-134 483.8 431 63.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 8.9e-134 481.1 452 60.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.5e-133 480.3 452 60.6
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.6e-133 479.6 436 63.1
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 7.1e-131 471.5 444 58.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.2e-131 471.1 432 60.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 2.1e-130 469.9 457 59.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.5e-130 469.2 457 59.7
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 5.1e-129 465.3 438 59.6
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.5e-128 463.8 459 57.3
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 5.6e-128 461.8 455 58.9
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.6e-127 460.3 429 60.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.4e-126 456.4 425 61.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 9.9e-125 451.1 435 60.0
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.4e-123 446.4 427 59.7
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 4.2e-123 445.7 444 58.1
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.2e-122 444.1 444 58.1
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.0e-121 439.5 439 56.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.6e-119 432.6 308 76.6
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.4e-117 426.0 437 57.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 3.8e-116 422.5 442 58.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.5e-114 416.0 383 64.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.5e-112 409.8 438 54.3
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.3e-112 409.1 367 61.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 3.4e-109 399.4 437 55.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.5e-109 399.1 311 66.6
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.2e-106 391.0 465 52.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.3e-104 382.5 368 60.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 9.6e-104 381.3 432 53.2
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 4.0e-102 375.9 375 59.5
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.0e-102 375.9 439 54.7
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.1e-98 363.6 425 53.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.3e-95 354.4 319 62.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 9.0e-94 348.2 442 50.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.5e-92 342.0 476 47.9
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.2e-87 327.0 307 60.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 6.9e-86 322.0 514 43.0
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 5.3e-78 295.8 214 74.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.3e-78 295.8 439 46.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.9e-77 292.4 439 46.5
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.1e-70 269.6 169 78.1
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-64 251.5 349 48.4
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 3.0e-57 226.9 262 51.1
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 3.0e-57 226.9 262 51.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.4e-54 218.0 138 78.3
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.7e-52 211.1 344 43.6
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.2e-43 179.9 189 52.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.2e-42 178.3 323 41.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.1e-35 155.2 109 69.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.1e-33 147.1 74 91.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.5e-32 144.8 134 56.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-32 144.8 134 56.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.8e-32 142.1 92 76.1
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.3e-31 141.7 176 49.4
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-30 138.7 84 81.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.4e-30 138.3 260 41.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.9e-30 137.9 441 28.6
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 7.8e-29 132.5 69 89.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 5.6e-27 126.3 121 57.0
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.7e-26 123.2 68 83.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.1e-25 122.1 93 66.7
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.7e-23 113.6 137 53.3
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 6.6e-20 102.8 520 25.8
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 3.5e-13 80.5 91 53.8
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.0e-12 77.4 62 64.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 7.3e-11 72.8 69 59.4
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 9.9e-08 62.4 129 38.8


User provided reference genes

Program Settings