Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 97.6
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 4.2e-32 141.0 82 98.8
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 4.2e-32 141.0 82 98.8
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 4.2e-32 141.0 82 98.8
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 7.1e-32 140.2 82 98.8
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 9.3e-32 139.8 82 97.6
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 1.6e-31 139.0 82 97.6
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 2.7e-31 138.3 82 96.3
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 7.8e-31 136.7 79 100.0
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.3e-30 136.0 82 95.1
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 96.3
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 3.0e-30 134.8 82 97.6
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.0e-30 134.8 82 92.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.0e-30 134.8 82 96.3
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 6.6e-30 133.7 78 98.7
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 6.6e-30 133.7 82 93.9
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 8.7e-30 133.3 82 93.9
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 8.7e-30 133.3 82 92.7
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 1.1e-29 132.9 77 98.7
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 1.1e-29 132.9 77 100.0
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 1.9e-29 132.1 81 93.8
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 4.3e-29 131.0 82 96.3
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 7.3e-29 130.2 82 78.0
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 2.8e-28 128.3 77 97.4
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 6.2e-28 127.1 82 73.2
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 1.8e-27 125.6 82 93.9
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 4.0e-27 124.4 81 92.6
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 4.0e-27 124.4 81 92.6
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.3e-27 124.0 81 91.4
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.3e-27 124.0 81 91.4
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 4.5e-26 120.9 82 85.4
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 9.9e-26 119.8 76 94.7
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 9.9e-26 119.8 76 94.7
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 76 94.7
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 76 94.7
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 9.9e-26 119.8 76 94.7
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 75 96.0
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.2e-25 118.6 72 95.8
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 4.9e-25 117.5 71 95.8
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 6.4e-25 117.1 74 93.2
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 3.2e-24 114.8 82 67.1
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 4.6e-23 110.9 81 67.9
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-23 110.9 69 95.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-23 110.9 69 95.7
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-23 110.9 69 95.7
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 1.0e-22 109.8 70 94.3
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.0e-22 109.8 69 75.4
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.3e-22 108.6 78 84.6
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 8.7e-22 106.7 47 100.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 4.3e-21 104.4 81 63.0
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 4.3e-21 104.4 46 100.0
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.3e-20 102.8 69 88.4
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 3.7e-20 101.3 47 95.7
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 6.2e-20 100.5 82 64.6
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 6.2e-20 100.5 82 64.6
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 8.1e-20 100.1 47 95.7
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 8.1e-20 100.1 82 81.7
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-19 99.8 47 95.7
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 2.4e-19 98.6 82 64.6
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 2.4e-19 98.6 82 64.6
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 2.4e-19 98.6 82 64.6
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 6.9e-19 97.1 82 59.8
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-15 85.9 38 94.7
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.8e-14 82.4 54 72.2
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 1.8e-14 82.4 57 70.2
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 3.0e-14 81.6 55 70.9
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 3.9e-14 81.3 55 70.9
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 8.7e-14 80.1 55 70.9
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.1e-13 79.7 36 97.2
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-13 79.0 34 100.0
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 2.5e-13 78.6 33 100.0
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 9.6e-13 76.6 55 69.1
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 2.1e-12 75.5 55 65.5
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 3.7e-12 74.7 55 67.3
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 2.4e-11 72.0 52 67.3
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-11 70.5 55 63.6
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-10 68.6 28 100.0
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 2.9e-09 65.1 47 63.8
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 8.4e-09 63.5 30 90.0
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 5.5e-08 60.8 49 63.3
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 9.3e-08 60.1 54 53.7
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 1.0e-06 56.6 46 56.5
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 3.0e-06 55.1 44 61.4
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 3.9e-06 54.7 50 58.0
Medtr6g080310 Medicago truncatula HOM05D001200 ORTHO05D002731 8.7e-06 53.5 30 76.7


User provided reference genes

Program Settings