Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 7.3e-49 196.8 94 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 6.2e-48 193.7 94 97.9
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 6.2e-48 193.7 94 97.9
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 97.9
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 97.9
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 3.1e-47 191.4 94 97.9
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 3.1e-47 191.4 94 97.9
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 4.0e-47 191.0 93 97.8
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 5.3e-47 190.7 94 97.9
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-46 189.5 94 95.7
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 94.7
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 93.6
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 93.6
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 94.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.9e-44 182.2 94 93.6
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.2e-44 181.4 94 92.6
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 92.6
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 91.5
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 89.4
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 90.4
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-42 175.6 92 89.1
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 90.4
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.6e-42 173.7 94 89.4
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.6e-41 170.6 94 90.4
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 86.2
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 87.2
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.8e-40 168.3 82 96.3
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.1e-40 166.8 94 87.2
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 8.1e-40 166.8 81 97.5
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.4e-39 165.2 94 87.2
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 4.0e-39 164.5 94 85.1
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 5.3e-39 164.1 83 94.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.4e-38 161.4 81 95.1
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 3.4e-38 161.4 82 93.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-38 161.4 94 86.2
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 5.8e-38 160.6 84 89.3
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 9.9e-38 159.8 83 91.6
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.7e-37 159.1 94 84.0
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 2.2e-37 158.7 82 87.8
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 8.4e-37 156.8 94 85.1
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-36 156.4 81 92.6
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.4e-36 156.0 84 86.9
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.3e-36 153.3 77 93.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.2e-35 152.9 79 89.9
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 2.1e-35 152.1 94 78.7
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 2.5e-33 145.2 74 93.2
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.3e-33 144.4 79 84.8
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 5.6e-33 144.1 79 86.1
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.6e-32 142.5 79 86.1
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 2.8e-32 141.7 72 93.1
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.7e-32 141.4 72 91.7
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.1e-31 139.8 82 82.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.4e-31 139.4 94 77.7
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-30 136.0 74 86.5
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.4e-30 134.8 94 72.3
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 4.5e-30 134.4 69 92.8
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 4.5e-30 134.4 69 92.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.3e-29 132.9 86 73.3
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.4e-29 130.6 63 98.4
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 1.6e-27 125.9 64 95.3
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.5e-27 124.8 73 83.6
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-27 124.8 75 81.3
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-27 124.8 75 81.3
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-27 124.8 75 81.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.3e-26 122.9 67 89.6
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 8.7e-26 120.2 63 90.5
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.6e-24 115.9 83 72.3
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.8e-24 114.4 61 88.5
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.1e-23 111.7 59 91.5
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.0e-23 111.3 75 69.3
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.0e-23 111.3 53 96.2
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.0e-21 106.7 62 83.9
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 6.5e-21 104.0 62 85.5
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-20 102.8 59 83.1
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-19 98.2 49 93.9
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 6.0e-19 97.4 56 83.9
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 6.0e-19 97.4 82 65.9
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-18 95.9 50 88.0
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.8e-18 95.9 52 84.6
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 2.3e-18 95.5 44 97.7
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.7e-18 94.0 61 77.0
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 8.7e-18 93.6 44 100.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.1e-17 93.2 44 95.5
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 2.5e-17 92.0 77 64.9
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 2.2e-16 89.0 43 93.0
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 4.8e-16 87.8 70 65.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.3e-16 87.4 46 87.0
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.1e-15 85.1 41 97.6
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-13 80.1 37 94.6
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.0e-13 80.1 84 52.4
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 2.5e-12 75.5 41 87.8
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 4.2e-12 74.7 44 81.8
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.2e-11 73.2 37 91.9
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 2.7e-11 72.0 35 97.1
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 5.1e-10 67.8 32 93.8
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 8.8e-10 67.0 89 42.7
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 7.4e-09 63.9 30 93.3
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 5.3e-07 57.8 40 60.0


User provided reference genes

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