Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 3.5e-95 351.7 185 100.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 2.1e-84 315.8 185 88.6
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 8.1e-84 313.9 185 88.6
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 4.0e-83 311.6 192 85.9
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 1.2e-82 310.1 190 86.3
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 1.2e-82 310.1 190 86.3
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 3.4e-82 308.5 190 86.3
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 3.2e-80 302.0 185 84.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.6e-79 299.7 185 83.8
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 3.5e-79 298.5 181 84.5
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 7.8e-79 297.4 185 84.3
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 7.8e-79 297.4 185 84.9
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-78 295.8 195 80.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-78 295.8 195 80.0
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 2.5e-77 292.4 192 81.2
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 7.3e-77 290.8 188 80.9
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-76 290.0 196 78.6
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 2.8e-76 288.9 186 82.8
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-76 287.7 185 82.2
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 3.1e-75 285.4 197 78.2
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.0e-74 282.7 188 79.8
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.4e-74 282.0 175 84.6
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 4.5e-74 281.6 194 77.8
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 5.8e-74 281.2 198 77.8
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 6.4e-73 277.7 229 68.6
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.1e-72 274.2 185 80.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 5.6e-69 264.6 185 77.3
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.8e-68 262.3 188 77.7
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-67 260.0 189 76.7
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 4.9e-65 251.5 158 84.2
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 4.9e-65 251.5 158 84.2
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 4.9e-65 251.5 158 84.2
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 4.9e-65 251.5 158 84.2
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 4.9e-65 251.5 158 84.2
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.0e-62 242.3 185 72.4
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 3.1e-59 232.3 136 89.0
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 3.1e-59 232.3 136 89.0
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 3.2e-56 222.2 137 83.9
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 4.6e-55 218.4 132 85.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 3.0e-54 215.7 132 84.8
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 5.1e-54 214.9 157 74.5
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 7.4e-53 211.1 152 75.7
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 4.8e-52 208.4 137 81.8
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.2e-52 207.6 133 82.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.2e-52 207.6 133 82.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.2e-52 207.6 133 82.0
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.8e-51 206.5 145 77.9
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 4.5e-50 201.8 137 80.3
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.2e-49 199.5 129 83.7
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.2e-49 199.5 129 81.4
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 8.5e-49 197.6 128 82.0
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.5e-49 197.6 131 80.9
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 8.5e-49 197.6 132 79.5
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 2.5e-48 196.1 141 74.5
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.6e-47 193.4 130 76.2
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.1e-47 193.0 129 79.8
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 7.9e-47 191.0 133 76.7
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.0e-46 189.1 145 71.0
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.7e-46 188.0 186 62.4
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 7.4e-45 184.5 124 78.2
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 7.4e-45 184.5 118 83.1
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 7.4e-45 184.5 118 81.4
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.4e-43 180.3 125 78.4
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.6e-42 176.0 115 80.9
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 2.6e-42 176.0 126 75.4
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 2.6e-42 176.0 126 75.4
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 2.6e-42 176.0 126 75.4
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.4e-42 175.6 106 87.7
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.1e-40 170.6 152 65.8
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-40 170.2 112 81.2
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.4e-38 163.7 98 85.7
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.4e-38 163.7 155 62.6
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 3.0e-38 162.5 136 69.1
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 3.0e-38 162.5 126 71.4
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 3.9e-38 162.2 96 84.4
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 3.9e-38 162.2 120 73.3
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.4e-37 158.7 132 68.2
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 7.4e-37 157.9 95 88.4
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 7.4e-37 157.9 95 88.4
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.7e-36 156.8 99 83.8
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-36 156.0 92 83.7
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.4e-35 152.9 122 68.9
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.4e-35 152.9 199 50.8
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 5.3e-35 151.8 90 85.6
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.5e-34 150.2 115 73.0
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.0e-34 149.8 132 62.1
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.0e-34 149.8 132 62.1
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 3.2e-32 142.5 157 57.3
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 4.2e-32 142.1 127 63.8
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.7e-31 139.4 104 72.1
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 2.0e-29 133.3 89 78.7
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.3e-28 130.6 116 66.4
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 6.3e-28 128.3 94 73.4
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.0e-25 120.9 73 84.9
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 6.5e-25 118.2 188 38.8
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 8.5e-25 117.9 90 72.2
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.2e-24 115.5 72 86.1
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 4.0e-22 109.0 76 77.6
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.2e-22 108.6 77 75.3
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.5e-21 107.1 76 75.0
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.6e-21 106.3 67 83.6
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-21 105.9 76 72.4
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 3.3e-21 105.9 107 60.7
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 9.7e-21 104.4 73 75.3
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-19 100.5 61 83.6
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.4e-19 100.5 61 82.0
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.1e-19 99.0 68 76.5
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 2.0e-18 96.7 64 78.1
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 2.0e-18 96.7 54 87.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 3.8e-17 92.4 71 71.8
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.5e-17 91.7 67 71.6
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 6.5e-17 91.7 48 91.7
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 8.5e-17 91.3 64 78.1
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.1e-16 90.9 67 70.1
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.1e-16 90.9 65 72.3
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-16 89.7 74 70.3
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 4.2e-16 89.0 48 87.5
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 7.2e-16 88.2 69 68.1
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 7.2e-16 88.2 53 81.1
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.7e-15 86.3 53 79.2
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 1.4e-14 84.0 55 76.4
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 1.4e-14 84.0 47 89.4
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-14 83.6 53 79.2
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 3.0e-14 82.8 79 63.3
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-13 80.9 51 80.4
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 3.4e-13 79.3 64 65.6
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 7.5e-13 78.2 58 70.7
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.7e-12 77.0 55 70.9
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 1.4e-11 73.9 76 60.5
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 1.6e-10 70.5 83 54.2
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 1.6e-10 70.5 55 69.1
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-09 67.8 48 75.0
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.7e-09 67.0 48 72.9
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.7e-09 67.0 41 80.5
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.5e-08 63.9 41 78.0
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.2e-08 62.8 38 78.9
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.2e-08 62.8 38 78.9
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 4.7e-07 58.9 41 70.7
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 3.0e-06 56.2 47 59.6


User provided reference genes

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