Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1517_0005 Quercus lobata HOM05D003498 ORTHO05D004191 6.2e-41 170.2 80 100.0
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 4.2e-37 157.5 74 98.6
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 1.4e-32 142.5 74 83.8
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 5.3e-32 140.6 73 87.7
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.0e-31 138.7 73 84.9
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 1.7e-30 135.6 73 83.6
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 1.9e-29 132.1 73 82.2
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.5e-29 130.6 72 84.7
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 5.5e-29 130.6 72 80.6
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 7.2e-29 130.2 73 82.2
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 7.2e-29 130.2 73 78.1
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 7.2e-29 130.2 72 81.9
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 9.4e-29 129.8 73 80.8
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 1.2e-28 129.4 73 78.1
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 2.1e-28 128.6 72 81.9
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 2.7e-28 128.3 72 80.6
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 3.6e-28 127.9 72 79.2
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 3.6e-28 127.9 73 76.7
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 4.6e-28 127.5 73 78.1
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 4.6e-28 127.5 72 80.6
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 7.9e-28 126.7 73 79.5
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.0e-27 126.3 74 79.7
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 1.0e-27 126.3 73 79.5
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 1.0e-27 126.3 73 75.3
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 1.0e-27 126.3 72 80.6
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 1.0e-27 126.3 73 75.3
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.4e-27 125.9 72 80.6
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 1.8e-27 125.6 72 77.8
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 1.8e-27 125.6 72 77.8
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 1.8e-27 125.6 73 78.1
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 2.3e-27 125.2 73 76.7
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 2.3e-27 125.2 72 76.4
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 2.3e-27 125.2 72 77.8
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 3.0e-27 124.8 73 79.5
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 3.0e-27 124.8 72 76.4
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 3.9e-27 124.4 72 73.6
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 5.1e-27 124.0 72 76.4
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 5.1e-27 124.0 72 76.4
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 6.7e-27 123.6 72 72.2
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 6.7e-27 123.6 73 78.1
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 8.8e-27 123.2 73 75.3
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 1.1e-26 122.9 74 77.0
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 1.1e-26 122.9 73 75.3
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 1.5e-26 122.5 72 75.0
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 2.0e-26 122.1 74 77.0
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 2.0e-26 122.1 69 78.3
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 2.5e-26 121.7 73 74.0
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 2.5e-26 121.7 72 76.4
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 2.5e-26 121.7 72 72.2
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 3.3e-26 121.3 74 75.7
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 3.3e-26 121.3 74 74.3
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 4.3e-26 120.9 73 76.7
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 4.3e-26 120.9 73 76.7
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 4.3e-26 120.9 72 76.4
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 4.3e-26 120.9 72 76.4
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 5.7e-26 120.6 73 74.0
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 5.7e-26 120.6 72 72.2
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 5.7e-26 120.6 72 72.2
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 5.7e-26 120.6 72 72.2
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 5.7e-26 120.6 73 76.7
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 5.7e-26 120.6 73 76.7
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 9.7e-26 119.8 73 75.3
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 9.7e-26 119.8 73 75.3
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 9.7e-26 119.8 73 76.7
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 9.7e-26 119.8 73 75.3
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 1.3e-25 119.4 73 74.0
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 1.7e-25 119.0 72 70.8
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 2.2e-25 118.6 72 73.6
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 2.2e-25 118.6 72 75.0
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 2.2e-25 118.6 73 75.3
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 2.8e-25 118.2 73 72.6
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 3.7e-25 117.9 72 70.8
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 3.7e-25 117.9 73 74.0
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 3.7e-25 117.9 73 75.3
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 3.7e-25 117.9 72 73.6
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 4.8e-25 117.5 73 75.3
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 4.8e-25 117.5 73 75.3
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 4.8e-25 117.5 73 75.3
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 4.8e-25 117.5 72 69.4
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 6.3e-25 117.1 73 68.5
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.4e-24 115.9 73 75.3
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 1.4e-24 115.9 72 73.6
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 2.4e-24 115.2 73 71.2
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 4.1e-24 114.4 73 71.2
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 4.1e-24 114.4 72 73.6
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 4.1e-24 114.4 72 68.1
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 4.1e-24 114.4 72 72.2
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 4.1e-24 114.4 72 72.2
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 4.1e-24 114.4 72 68.1
CSS0025632 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.3e-24 114.0 63 81.0
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 6.9e-24 113.6 73 74.0
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 6.9e-24 113.6 73 74.0
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 1.5e-23 112.5 72 69.4
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 1.5e-23 112.5 72 72.2
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 2.6e-23 111.7 72 66.7
CSS0030890 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.6e-23 111.7 61 82.0
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 2.6e-23 111.7 73 69.9
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 2.6e-23 111.7 71 69.0
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.5e-23 110.9 73 65.8
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.0e-22 109.8 72 65.3
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.0e-22 109.8 73 64.4
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 1.0e-22 109.8 73 65.8
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 1.3e-22 109.4 72 70.8
MELO3C017855.2 Cucumis melo HOM05D003498 ORTHO05D004191 2.9e-22 108.2 73 65.8
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 3.8e-22 107.8 72 62.5
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 3.8e-22 107.8 72 61.1
AUR62044540 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.0e-22 107.5 73 63.0
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 6.5e-22 107.1 72 66.7
AUR62043688 Chenopodium quinoa HOM05D003498 ORTHO05D004191 6.5e-22 107.1 73 61.6
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 1.4e-21 105.9 72 65.3
AUR62040722 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.4e-21 105.9 72 62.5
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.2e-21 104.8 73 68.5
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 9.4e-21 103.2 73 64.4
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 9.4e-21 103.2 73 64.4
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 2.7e-20 101.7 73 63.0
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 3.6e-20 101.3 73 63.0
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 3.6e-20 101.3 73 61.6
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 4.7e-20 100.9 73 63.0
CsaV3_4G001780 Cucumis sativus L. HOM05D003498 ORTHO05D004191 4.7e-20 100.9 72 63.9
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 6.1e-20 100.5 73 60.3
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 6.1e-20 100.5 73 60.3
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 6.1e-20 100.5 75 66.7
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 1.4e-19 99.4 72 62.5
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 1.4e-19 99.4 72 59.7
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 1.4e-19 99.4 72 59.7
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 3.0e-19 98.2 73 58.9
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 3.9e-19 97.8 73 67.1
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 5.1e-19 97.4 73 60.3
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 6.7e-19 97.1 73 60.3
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 8.8e-19 96.7 73 58.9
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 1.3e-17 92.8 71 62.0
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 3.7e-17 91.3 71 54.9
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 6.3e-17 90.5 72 55.6
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 8.2e-17 90.1 72 51.4
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 1.2e-15 86.3 67 58.2
Dinv27202 Davidia involucrata HOM05D003498 ORTHO05D004191 3.5e-15 84.7 48 75.0
Hma1.2p1_1219F.1_g267800 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 1.3e-14 82.8 46 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2546 Anthoceros agrestis HOM05D003498 ORTHO05D004191 9.4e-13 76.6 72 47.2
Haze_21315 Corylus avellana HOM05D003498 ORTHO05D004191 2.1e-12 75.5 42 83.3
Mapoly0001s0438 Marchantia polymorpha HOM05D003498 ORTHO05D004191 3.6e-12 74.7 70 44.3
Lalb_Chr01g0016871 Lupinus albus HOM05D003498 ORTHO05D004191 1.8e-11 72.4 46 63.0
SMO201G0123 Selaginella moellendorffii HOM05D003498 ORTHO05D004191 2.3e-11 72.0 75 48.0
Haze_25285 Corylus avellana HOM05D003498 ORTHO05D004191 1.1e-10 69.7 42 78.6
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 2.0e-10 68.9 37 78.4
TPR.G5710 Trifolium pratense HOM05D003498 ORTHO05D004191 7.5e-10 67.0 58 60.3
Medtr0271s0030 Medicago truncatula HOM05D003498 ORTHO05D004191 1.3e-09 66.2 76 44.7
Cre03.g190750 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 1.7e-09 65.9 70 47.1
Dinv41748 Davidia involucrata HOM05D003498 ORTHO05D184261 2.2e-09 65.5 37 78.4
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.8e-09 65.1 36 80.6
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 2.8e-09 65.1 37 81.1
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 4.8e-09 64.3 36 80.6
CBR_g30299 Chara braunii HOM05D003498 ORTHO05D004191 6.3e-09 63.9 71 45.1
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 6.3e-09 63.9 42 66.7
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 8.2e-09 63.5 40 67.5
PSO384G2342 Papaver somniferum HOM05D003498 ORTHO05D004191 1.4e-08 62.8 41 65.9
Zm00001eb208950 Zea mays HOM05D003498 ORTHO05D004191 3.1e-08 61.6 42 64.3
Zm00001eb248420 Zea mays HOM05D003498 ORTHO05D004191 7.0e-08 60.5 42 64.3
AUR62012625 Chenopodium quinoa HOM05D000022 ORTHO05D137949 1.2e-07 59.7 59 49.2
Cre03.g190800 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 2.0e-07 58.9 72 40.3
CBR_g50851 Chara braunii HOM05D003498 ORTHO05D004191 5.9e-07 57.4 61 50.8
MCO11G310 Micromonas commoda HOM05D003498 ORTHO05D004191 1.0e-06 56.6 70 37.1
BcaC05g27043 Brassica carinata HOM05D031418 ORTHO05D032302 2.9e-06 55.1 71 40.8
AUR62042988 Chenopodium quinoa HOM05D003498 ORTHO05D004191 6.5e-06 53.9 42 47.6
AUR62003275 Chenopodium quinoa HOM05D003498 ORTHO05D004191 8.5e-06 53.5 42 47.6


User provided reference genes

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