Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 6.2e-174 614.0 301 100.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 5.8e-124 448.0 403 62.5
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 6.1e-89 331.6 407 50.6
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 5.7e-79 298.5 407 48.4
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.2e-63 247.7 402 40.0
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 2.2e-62 243.4 390 39.0
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 4.6e-60 235.7 404 39.6
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 4.6e-60 235.7 403 37.5
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 4.6e-60 235.7 403 37.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 7.3e-58 228.4 402 37.1
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.1e-57 226.9 403 38.7
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.8e-57 226.5 403 37.7
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.6e-57 226.1 400 37.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 4.7e-57 225.7 394 36.5
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.2e-57 225.3 401 37.7
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 5.2e-56 222.2 414 37.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 3.4e-55 219.5 394 37.3
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.4e-55 219.5 394 36.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.9e-54 216.5 415 36.1
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 6.4e-54 215.3 398 36.9
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.4e-53 214.2 417 36.7
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.4e-53 213.4 405 36.5
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 5.4e-53 212.2 402 36.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 5.4e-53 212.2 404 37.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 7.0e-53 211.8 423 35.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 4.6e-52 209.1 397 37.0
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 6.0e-52 208.8 405 35.8
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 6.6e-51 205.3 403 35.0
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 8.6e-51 204.9 420 34.8
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 8.6e-51 204.9 402 35.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.9e-50 203.8 168 65.5
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.9e-50 203.8 420 34.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 3.3e-50 203.0 414 34.1
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 4.3e-50 202.6 399 35.8
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 5.6e-50 202.2 426 33.6
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.3e-50 201.8 398 36.4
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.2e-49 201.1 398 36.4
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.6e-49 199.5 420 34.3
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 4.7e-49 199.1 403 35.2
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.1e-48 196.4 420 33.8
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 6.8e-48 195.3 403 34.5
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 8.9e-48 194.9 389 37.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 3.4e-47 193.0 332 40.7
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 4.4e-47 192.6 364 36.5
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.7e-46 190.7 403 34.2
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.2e-46 190.3 385 35.3
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 7.1e-45 185.3 393 35.9
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 1.6e-44 184.1 402 33.6
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 2.7e-44 183.3 131 74.8
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.0e-43 181.4 380 33.7
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 1.0e-43 181.4 131 74.0
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.3e-43 181.0 397 33.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.0e-43 179.9 402 33.6
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 6.6e-43 178.7 381 34.6
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.5e-42 177.6 375 33.1
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 2.5e-42 176.8 542 28.0
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.3e-42 176.4 397 32.2
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 4.3e-42 176.0 392 32.7
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 5.6e-42 175.6 387 31.8
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 9.5e-42 174.9 455 31.0
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.7e-41 172.6 400 33.5
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 8.1e-41 171.8 388 33.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 6.8e-40 168.7 396 34.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 8.9e-40 168.3 391 33.5
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 7.6e-39 165.2 368 32.9
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.3e-38 164.5 400 32.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.9e-38 163.3 401 31.7
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 6.4e-38 162.2 375 32.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.2e-37 159.8 454 30.8
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 3.2e-37 159.8 161 53.4
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 5.4e-37 159.1 398 31.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 7.1e-37 158.7 166 55.4
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 7.1e-37 158.7 381 32.3
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.6e-36 157.5 390 32.1
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.1e-36 157.1 392 31.9
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.7e-36 156.8 383 32.6
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.7e-36 156.8 171 52.6
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 6.0e-36 155.6 393 32.3
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.0e-35 154.8 393 32.1
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.0e-35 154.8 393 32.1
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.0e-35 154.8 391 32.2
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.0e-35 154.8 170 51.2
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 8.7e-35 151.8 427 30.9
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 8.7e-35 151.8 403 30.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.7e-35 151.8 344 33.1
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 2.8e-33 146.7 307 34.5
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.6e-33 146.4 394 32.0
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 1.8e-32 144.1 398 29.4
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.5e-31 141.0 404 30.7
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.2e-30 137.1 340 32.9
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 2.9e-30 136.7 189 43.4
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 4.9e-30 136.0 169 46.7
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 8.4e-30 135.2 371 31.3
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.2e-28 131.3 388 29.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.6e-28 131.0 170 47.1
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.7e-28 130.2 418 29.4
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 8.7e-27 125.2 310 33.5
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 1.5e-26 124.4 275 30.2
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 9.9e-23 111.7 56 96.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 2.4e-21 107.1 112 50.0
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.9e-20 102.1 88 58.0
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 7.9e-20 102.1 88 62.5
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 7.9e-20 102.1 88 62.5
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 1.0e-19 101.7 129 45.7
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 1.0e-19 101.7 119 41.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 3.0e-19 100.1 406 25.6
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 5.1e-19 99.4 388 26.3
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 4.3e-18 96.3 87 52.9
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.8e-17 93.6 124 41.1
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.1e-16 91.7 125 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 4.0e-16 89.7 215 28.4
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.2e-15 88.2 170 35.9
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.6e-15 87.0 125 38.4
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 2.2e-14 84.0 89 53.9
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.9e-14 83.6 137 38.7
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 4.9e-14 82.8 75 53.3
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.4e-13 81.3 84 51.2
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 9.3e-13 78.6 161 35.4
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 1.2e-12 78.2 109 35.8
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.2e-12 78.2 106 38.7
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 1.6e-12 77.8 44 77.3
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 1.6e-12 77.8 46 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.7e-12 77.0 151 33.1
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 4.6e-12 76.3 92 45.7
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 7.9e-12 75.5 168 31.0
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 6.7e-11 72.4 106 36.8
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 8.7e-11 72.0 46 71.7
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 8.7e-11 72.0 46 69.6
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 2.5e-10 70.5 39 79.5
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.3e-10 69.7 75 50.7
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.3e-10 69.7 94 39.4
QL01p053632 Quercus lobata HOM05D000426 ORTHO05D337155 4.8e-09 66.2 30 100.0
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 1.8e-08 64.3 46 60.9
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 2.6e-07 60.5 101 38.6
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 5.8e-07 59.3 122 32.0


User provided reference genes

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